miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2668 5' -65.1 NC_001491.2 + 98930 0.67 0.412321
Target:  5'- gCGCUCCGCCugaacgcccucugaGGCGGCaacGCCGGCCu -3'
miRNA:   3'- -GUGGGGCGG--------------CCGUUGcucCGGCCGGu -5'
2668 5' -65.1 NC_001491.2 + 90365 0.68 0.398519
Target:  5'- aGCCaCGCUuuccaauGCAuCGAGGCCGGCCu -3'
miRNA:   3'- gUGGgGCGGc------CGUuGCUCCGGCCGGu -5'
2668 5' -65.1 NC_001491.2 + 3604 0.68 0.390539
Target:  5'- aCGCCCCGCCGcGgaGGCGcAGGagGGCCu -3'
miRNA:   3'- -GUGGGGCGGC-Cg-UUGC-UCCggCCGGu -5'
2668 5' -65.1 NC_001491.2 + 2674 0.68 0.390539
Target:  5'- cCGCCCCGaCGGU--CGGGGCCcucGGCUg -3'
miRNA:   3'- -GUGGGGCgGCCGuuGCUCCGG---CCGGu -5'
2668 5' -65.1 NC_001491.2 + 32839 0.68 0.382665
Target:  5'- uCACCCCGuCCGGgGACcccuGGCCcgGGUCGg -3'
miRNA:   3'- -GUGGGGC-GGCCgUUGcu--CCGG--CCGGU- -5'
2668 5' -65.1 NC_001491.2 + 1577 0.68 0.359685
Target:  5'- gCGCCgCGCCGGCcgcaGGCGAGGUacacggGGCgCAg -3'
miRNA:   3'- -GUGGgGCGGCCG----UUGCUCCGg-----CCG-GU- -5'
2668 5' -65.1 NC_001491.2 + 31852 0.68 0.358935
Target:  5'- uCGCCcucggCCGCCGGCAGCGGcGGUccuccuaccccggCGGCUg -3'
miRNA:   3'- -GUGG-----GGCGGCCGUUGCU-CCG-------------GCCGGu -5'
2668 5' -65.1 NC_001491.2 + 118387 0.69 0.352242
Target:  5'- gUACCa-GUgGGCAccagaccuGCGGGGUCGGCCAa -3'
miRNA:   3'- -GUGGggCGgCCGU--------UGCUCCGGCCGGU- -5'
2668 5' -65.1 NC_001491.2 + 4270 0.69 0.344908
Target:  5'- gGCCUgCGCCucGGCGuagcGCGAGGC-GGCCAg -3'
miRNA:   3'- gUGGG-GCGG--CCGU----UGCUCCGgCCGGU- -5'
2668 5' -65.1 NC_001491.2 + 97270 0.69 0.323572
Target:  5'- gCAUCuuGCUGcGCGACu-GGCUGGCCAu -3'
miRNA:   3'- -GUGGggCGGC-CGUUGcuCCGGCCGGU- -5'
2668 5' -65.1 NC_001491.2 + 10432 0.7 0.309903
Target:  5'- gACgCCGCCGGCgGACGcagagcgcuacuGGGCCGcGCUAc -3'
miRNA:   3'- gUGgGGCGGCCG-UUGC------------UCCGGC-CGGU- -5'
2668 5' -65.1 NC_001491.2 + 12478 0.7 0.309903
Target:  5'- cCGCCCgGCgGGCGGCGGGcGCCcGCgGg -3'
miRNA:   3'- -GUGGGgCGgCCGUUGCUC-CGGcCGgU- -5'
2668 5' -65.1 NC_001491.2 + 5377 0.7 0.277669
Target:  5'- cCGCCgCUGCCGGCGGcCGAGGgCGaCCGc -3'
miRNA:   3'- -GUGG-GGCGGCCGUU-GCUCCgGCcGGU- -5'
2668 5' -65.1 NC_001491.2 + 34397 0.71 0.265544
Target:  5'- aGCCCCuggaGCCGGCGGCccAGGCCGgaGCCu -3'
miRNA:   3'- gUGGGG----CGGCCGUUGc-UCCGGC--CGGu -5'
2668 5' -65.1 NC_001491.2 + 28802 0.71 0.265544
Target:  5'- aCGCCCCGCaCGGCuguccgUGGGGCaUGGCUg -3'
miRNA:   3'- -GUGGGGCG-GCCGuu----GCUCCG-GCCGGu -5'
2668 5' -65.1 NC_001491.2 + 100715 0.71 0.259644
Target:  5'- uUugUCCGCCa-UAcCGAGGCCGGCCAu -3'
miRNA:   3'- -GugGGGCGGccGUuGCUCCGGCCGGU- -5'
2668 5' -65.1 NC_001491.2 + 147704 0.72 0.231739
Target:  5'- -cCCCCGUCGGCcuGGCaGGGuCCGGCCc -3'
miRNA:   3'- guGGGGCGGCCG--UUGcUCC-GGCCGGu -5'
2668 5' -65.1 NC_001491.2 + 25028 0.72 0.201633
Target:  5'- cCGCCaCCGCCGGCAcCGAGGUCuuCCGc -3'
miRNA:   3'- -GUGG-GGCGGCCGUuGCUCCGGccGGU- -5'
2668 5' -65.1 NC_001491.2 + 64806 0.73 0.196959
Target:  5'- uGCCCCGCgGGCAcccugucgGAGGCCGgacGCCAc -3'
miRNA:   3'- gUGGGGCGgCCGUug------CUCCGGC---CGGU- -5'
2668 5' -65.1 NC_001491.2 + 68923 0.73 0.192379
Target:  5'- aACgCCCGCCGGCGu---GGCCGGCa- -3'
miRNA:   3'- gUG-GGGCGGCCGUugcuCCGGCCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.