miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2668 5' -65.1 NC_001491.2 + 148928 0.67 0.423073
Target:  5'- gGCCCCacGCUGGCugcggggggagAugGGGGCCaGGCUc -3'
miRNA:   3'- gUGGGG--CGGCCG-----------UugCUCCGG-CCGGu -5'
2668 5' -65.1 NC_001491.2 + 147704 0.72 0.231739
Target:  5'- -cCCCCGUCGGCcuGGCaGGGuCCGGCCc -3'
miRNA:   3'- guGGGGCGGCCG--UUGcUCC-GGCCGGu -5'
2668 5' -65.1 NC_001491.2 + 147138 0.66 0.478335
Target:  5'- cUACCCUuccgGCCaGGCAGCGAaGGacaaccuccguuucuUCGGCCAg -3'
miRNA:   3'- -GUGGGG----CGG-CCGUUGCU-CC---------------GGCCGGU- -5'
2668 5' -65.1 NC_001491.2 + 118387 0.69 0.352242
Target:  5'- gUACCa-GUgGGCAccagaccuGCGGGGUCGGCCAa -3'
miRNA:   3'- -GUGGggCGgCCGU--------UGCUCCGGCCGGU- -5'
2668 5' -65.1 NC_001491.2 + 100715 0.71 0.259644
Target:  5'- uUugUCCGCCa-UAcCGAGGCCGGCCAu -3'
miRNA:   3'- -GugGGGCGGccGUuGCUCCGGCCGGU- -5'
2668 5' -65.1 NC_001491.2 + 98930 0.67 0.412321
Target:  5'- gCGCUCCGCCugaacgcccucugaGGCGGCaacGCCGGCCu -3'
miRNA:   3'- -GUGGGGCGG--------------CCGUUGcucCGGCCGGu -5'
2668 5' -65.1 NC_001491.2 + 97270 0.69 0.323572
Target:  5'- gCAUCuuGCUGcGCGACu-GGCUGGCCAu -3'
miRNA:   3'- -GUGGggCGGC-CGUUGcuCCGGCCGGU- -5'
2668 5' -65.1 NC_001491.2 + 90365 0.68 0.398519
Target:  5'- aGCCaCGCUuuccaauGCAuCGAGGCCGGCCu -3'
miRNA:   3'- gUGGgGCGGc------CGUuGCUCCGGCCGGu -5'
2668 5' -65.1 NC_001491.2 + 77237 1.07 0.000644
Target:  5'- gCACCCCGCCGGCAACGAGGCCGGCCAu -3'
miRNA:   3'- -GUGGGGCGGCCGUUGCUCCGGCCGGU- -5'
2668 5' -65.1 NC_001491.2 + 68923 0.73 0.192379
Target:  5'- aACgCCCGCCGGCGu---GGCCGGCa- -3'
miRNA:   3'- gUG-GGGCGGCCGUugcuCCGGCCGgu -5'
2668 5' -65.1 NC_001491.2 + 64806 0.73 0.196959
Target:  5'- uGCCCCGCgGGCAcccugucgGAGGCCGgacGCCAc -3'
miRNA:   3'- gUGGGGCGgCCGUug------CUCCGGC---CGGU- -5'
2668 5' -65.1 NC_001491.2 + 64352 0.66 0.492704
Target:  5'- cCGCCacacaCGCCuGCAucACGGGGggguugauggacCCGGCCAa -3'
miRNA:   3'- -GUGGg----GCGGcCGU--UGCUCC------------GGCCGGU- -5'
2668 5' -65.1 NC_001491.2 + 44031 0.66 0.4837
Target:  5'- gGCCCUgGCCauGGCAgcacaGCGAagaaaaucaaucGGUCGGCCAg -3'
miRNA:   3'- gUGGGG-CGG--CCGU-----UGCU------------CCGGCCGGU- -5'
2668 5' -65.1 NC_001491.2 + 35947 0.67 0.423073
Target:  5'- gCACCCCGgcccgagccCCGGCGugGcccAGGCCcuccGCCGc -3'
miRNA:   3'- -GUGGGGC---------GGCCGUugC---UCCGGc---CGGU- -5'
2668 5' -65.1 NC_001491.2 + 35032 0.66 0.501784
Target:  5'- aCGCCUgGgCCGGCAAcuggacCGGGGCCccggacgucucGGCCc -3'
miRNA:   3'- -GUGGGgC-GGCCGUU------GCUCCGG-----------CCGGu -5'
2668 5' -65.1 NC_001491.2 + 34397 0.71 0.265544
Target:  5'- aGCCCCuggaGCCGGCGGCccAGGCCGgaGCCu -3'
miRNA:   3'- gUGGGG----CGGCCGUUGc-UCCGGC--CGGu -5'
2668 5' -65.1 NC_001491.2 + 34036 0.67 0.431457
Target:  5'- -uCCUCGcCCGGCGGCGAGcccuucuCCGGCUc -3'
miRNA:   3'- guGGGGC-GGCCGUUGCUCc------GGCCGGu -5'
2668 5' -65.1 NC_001491.2 + 32839 0.68 0.382665
Target:  5'- uCACCCCGuCCGGgGACcccuGGCCcgGGUCGg -3'
miRNA:   3'- -GUGGGGC-GGCCgUUGcu--CCGG--CCGGU- -5'
2668 5' -65.1 NC_001491.2 + 32501 0.66 0.501784
Target:  5'- gUACCUgGagGGCGuccGCGAGGCCaaucuGGCCAa -3'
miRNA:   3'- -GUGGGgCggCCGU---UGCUCCGG-----CCGGU- -5'
2668 5' -65.1 NC_001491.2 + 32312 0.67 0.414787
Target:  5'- aACCCCGUCGGCcGCc-GGCUcucccgGGCCGu -3'
miRNA:   3'- gUGGGGCGGCCGuUGcuCCGG------CCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.