Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26680 | 5' | -57.4 | NC_005808.1 | + | 25900 | 1.11 | 0.000329 |
Target: 5'- aCACCUACCGCUACGUGGUCACGGCCCu -3' miRNA: 3'- -GUGGAUGGCGAUGCACCAGUGCCGGG- -5' |
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26680 | 5' | -57.4 | NC_005808.1 | + | 25477 | 0.8 | 0.066335 |
Target: 5'- cCAUCUGCCGCaacuuCGUGGUCAagccccaaGGCCCg -3' miRNA: 3'- -GUGGAUGGCGau---GCACCAGUg-------CCGGG- -5' |
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26680 | 5' | -57.4 | NC_005808.1 | + | 18307 | 0.77 | 0.120535 |
Target: 5'- gACCUcACCGCccccACGUGGUCACuGUCCg -3' miRNA: 3'- gUGGA-UGGCGa---UGCACCAGUGcCGGG- -5' |
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26680 | 5' | -57.4 | NC_005808.1 | + | 31613 | 0.76 | 0.1271 |
Target: 5'- cUACCUGCUGCUuuacgcaGCGUGG-CAgGGCCUc -3' miRNA: 3'- -GUGGAUGGCGA-------UGCACCaGUgCCGGG- -5' |
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26680 | 5' | -57.4 | NC_005808.1 | + | 31652 | 0.76 | 0.13474 |
Target: 5'- aUACCgUGCCGCUugGUGGgccuaCAcCGGCCa -3' miRNA: 3'- -GUGG-AUGGCGAugCACCa----GU-GCCGGg -5' |
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26680 | 5' | -57.4 | NC_005808.1 | + | 38389 | 0.75 | 0.158947 |
Target: 5'- aGCCgcaaGCCGCgACGUGcUCGCGGCCa -3' miRNA: 3'- gUGGa---UGGCGaUGCACcAGUGCCGGg -5' |
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26680 | 5' | -57.4 | NC_005808.1 | + | 37271 | 0.74 | 0.177203 |
Target: 5'- uGCCaUGCUGCgccACGUGcUCGCGGCCUa -3' miRNA: 3'- gUGG-AUGGCGa--UGCACcAGUGCCGGG- -5' |
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26680 | 5' | -57.4 | NC_005808.1 | + | 8621 | 0.73 | 0.197298 |
Target: 5'- gCGCUUcucgGCCGCUGCGguggcgaGGUCGcCGGCCUu -3' miRNA: 3'- -GUGGA----UGGCGAUGCa------CCAGU-GCCGGG- -5' |
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26680 | 5' | -57.4 | NC_005808.1 | + | 36810 | 0.73 | 0.202624 |
Target: 5'- gGCgCUGCCGCgaugGCGggacacgaUGGUCAaGGCCCu -3' miRNA: 3'- gUG-GAUGGCGa---UGC--------ACCAGUgCCGGG- -5' |
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26680 | 5' | -57.4 | NC_005808.1 | + | 20833 | 0.72 | 0.237249 |
Target: 5'- gCACCgUGCCGggcggccugucCUAUGUGGaCGCGGCCg -3' miRNA: 3'- -GUGG-AUGGC-----------GAUGCACCaGUGCCGGg -5' |
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26680 | 5' | -57.4 | NC_005808.1 | + | 29212 | 0.71 | 0.262992 |
Target: 5'- cCGCCUacaACCGC-GCGcUGGgCAUGGCCUa -3' miRNA: 3'- -GUGGA---UGGCGaUGC-ACCaGUGCCGGG- -5' |
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26680 | 5' | -57.4 | NC_005808.1 | + | 31502 | 0.71 | 0.276694 |
Target: 5'- aUACCuUGCCGCcgGCGUGcugCugGGCCUc -3' miRNA: 3'- -GUGG-AUGGCGa-UGCACca-GugCCGGG- -5' |
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26680 | 5' | -57.4 | NC_005808.1 | + | 4162 | 0.71 | 0.283756 |
Target: 5'- cCACCUugCGCgcCGUGGUCGaGGUguagCCa -3' miRNA: 3'- -GUGGAugGCGauGCACCAGUgCCG----GG- -5' |
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26680 | 5' | -57.4 | NC_005808.1 | + | 39764 | 0.71 | 0.29096 |
Target: 5'- uGCUggcGCCGCUgcGCGUGGcCGCgagcaccuGGCCCg -3' miRNA: 3'- gUGGa--UGGCGA--UGCACCaGUG--------CCGGG- -5' |
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26680 | 5' | -57.4 | NC_005808.1 | + | 14898 | 0.7 | 0.313427 |
Target: 5'- gGCgaGCCGCUGCc-GGcgCGCGGCCUg -3' miRNA: 3'- gUGgaUGGCGAUGcaCCa-GUGCCGGG- -5' |
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26680 | 5' | -57.4 | NC_005808.1 | + | 2069 | 0.7 | 0.321203 |
Target: 5'- gGCCUGuaGCUugacauCGUGGaCAuCGGCCCa -3' miRNA: 3'- gUGGAUggCGAu-----GCACCaGU-GCCGGG- -5' |
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26680 | 5' | -57.4 | NC_005808.1 | + | 14420 | 0.7 | 0.34539 |
Target: 5'- gCACCUGCUGg-GCGUGGgcaACGGCg- -3' miRNA: 3'- -GUGGAUGGCgaUGCACCag-UGCCGgg -5' |
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26680 | 5' | -57.4 | NC_005808.1 | + | 32465 | 0.69 | 0.362227 |
Target: 5'- -cCCUACUGCcgAgGUGGggGCGGCCg -3' miRNA: 3'- guGGAUGGCGa-UgCACCagUGCCGGg -5' |
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26680 | 5' | -57.4 | NC_005808.1 | + | 38558 | 0.69 | 0.362227 |
Target: 5'- gGCCUGCCGCU-CGc---CGCGGCCg -3' miRNA: 3'- gUGGAUGGCGAuGCaccaGUGCCGGg -5' |
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26680 | 5' | -57.4 | NC_005808.1 | + | 4040 | 0.69 | 0.379625 |
Target: 5'- aGCCgGCCGCggcgaGCGgcaGGcCAgCGGCCCa -3' miRNA: 3'- gUGGaUGGCGa----UGCa--CCaGU-GCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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