miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26680 5' -57.4 NC_005808.1 + 33491 0.67 0.464479
Target:  5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3'
miRNA:   3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5'
26680 5' -57.4 NC_005808.1 + 18384 0.68 0.406751
Target:  5'- gGCCuUGCCGaugGCGccGGUgGCGGCCa -3'
miRNA:   3'- gUGG-AUGGCga-UGCa-CCAgUGCCGGg -5'
26680 5' -57.4 NC_005808.1 + 6396 0.67 0.454556
Target:  5'- gGCCgGCCgGCccgGUGuaGUCGCGGCCCa -3'
miRNA:   3'- gUGGaUGG-CGaugCAC--CAGUGCCGGG- -5'
26680 5' -57.4 NC_005808.1 + 33203 0.67 0.464479
Target:  5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3'
miRNA:   3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5'
26680 5' -57.4 NC_005808.1 + 33251 0.67 0.464479
Target:  5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3'
miRNA:   3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5'
26680 5' -57.4 NC_005808.1 + 33299 0.67 0.464479
Target:  5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3'
miRNA:   3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5'
26680 5' -57.4 NC_005808.1 + 33347 0.67 0.464479
Target:  5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3'
miRNA:   3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5'
26680 5' -57.4 NC_005808.1 + 33395 0.67 0.464479
Target:  5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3'
miRNA:   3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5'
26680 5' -57.4 NC_005808.1 + 33443 0.67 0.464479
Target:  5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3'
miRNA:   3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5'
26680 5' -57.4 NC_005808.1 + 41215 0.68 0.397574
Target:  5'- aACCgUugUGC-GCGUGGcCGCGGCgCCc -3'
miRNA:   3'- gUGG-AugGCGaUGCACCaGUGCCG-GG- -5'
26680 5' -57.4 NC_005808.1 + 38558 0.69 0.362227
Target:  5'- gGCCUGCCGCU-CGc---CGCGGCCg -3'
miRNA:   3'- gUGGAUGGCGAuGCaccaGUGCCGGg -5'
26680 5' -57.4 NC_005808.1 + 32465 0.69 0.362227
Target:  5'- -cCCUACUGCcgAgGUGGggGCGGCCg -3'
miRNA:   3'- guGGAUGGCGa-UgCACCagUGCCGGg -5'
26680 5' -57.4 NC_005808.1 + 31652 0.76 0.13474
Target:  5'- aUACCgUGCCGCUugGUGGgccuaCAcCGGCCa -3'
miRNA:   3'- -GUGG-AUGGCGAugCACCa----GU-GCCGGg -5'
26680 5' -57.4 NC_005808.1 + 38389 0.75 0.158947
Target:  5'- aGCCgcaaGCCGCgACGUGcUCGCGGCCa -3'
miRNA:   3'- gUGGa---UGGCGaUGCACcAGUGCCGGg -5'
26680 5' -57.4 NC_005808.1 + 37271 0.74 0.177203
Target:  5'- uGCCaUGCUGCgccACGUGcUCGCGGCCUa -3'
miRNA:   3'- gUGG-AUGGCGa--UGCACcAGUGCCGGG- -5'
26680 5' -57.4 NC_005808.1 + 8621 0.73 0.197298
Target:  5'- gCGCUUcucgGCCGCUGCGguggcgaGGUCGcCGGCCUu -3'
miRNA:   3'- -GUGGA----UGGCGAUGCa------CCAGU-GCCGGG- -5'
26680 5' -57.4 NC_005808.1 + 36810 0.73 0.202624
Target:  5'- gGCgCUGCCGCgaugGCGggacacgaUGGUCAaGGCCCu -3'
miRNA:   3'- gUG-GAUGGCGa---UGC--------ACCAGUgCCGGG- -5'
26680 5' -57.4 NC_005808.1 + 31502 0.71 0.276694
Target:  5'- aUACCuUGCCGCcgGCGUGcugCugGGCCUc -3'
miRNA:   3'- -GUGG-AUGGCGa-UGCACca-GugCCGGG- -5'
26680 5' -57.4 NC_005808.1 + 4162 0.71 0.283756
Target:  5'- cCACCUugCGCgcCGUGGUCGaGGUguagCCa -3'
miRNA:   3'- -GUGGAugGCGauGCACCAGUgCCG----GG- -5'
26680 5' -57.4 NC_005808.1 + 39764 0.71 0.29096
Target:  5'- uGCUggcGCCGCUgcGCGUGGcCGCgagcaccuGGCCCg -3'
miRNA:   3'- gUGGa--UGGCGA--UGCACCaGUG--------CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.