miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26682 3' -59.7 NC_005808.1 + 39748 0.65 0.413254
Target:  5'- cCAGGCCCCucgcuGGuGCUggcgccgcugcgcgUGGCCGcGAGCa -3'
miRNA:   3'- aGUUCGGGGu----UC-CGG--------------GCCGGCuCUUG- -5'
26682 3' -59.7 NC_005808.1 + 13226 0.66 0.405828
Target:  5'- cCGAGUCCgAGGGCuggggcaaggccaCCGGCgcgugguuCGAGGACu -3'
miRNA:   3'- aGUUCGGGgUUCCG-------------GGCCG--------GCUCUUG- -5'
26682 3' -59.7 NC_005808.1 + 29670 0.66 0.394848
Target:  5'- ---uGCCCagCAGGGCgCGGCCGuguguuugaaaaucGGAACu -3'
miRNA:   3'- aguuCGGG--GUUCCGgGCCGGC--------------UCUUG- -5'
26682 3' -59.7 NC_005808.1 + 37985 0.66 0.379625
Target:  5'- gCGGGCCaacauuGGCCUGGCUGAccuGGGCg -3'
miRNA:   3'- aGUUCGGgguu--CCGGGCCGGCU---CUUG- -5'
26682 3' -59.7 NC_005808.1 + 35132 0.67 0.34539
Target:  5'- gUCGAGUCCuggugCAAGGCCauucgcgcgaaGGCCGAagccGAACu -3'
miRNA:   3'- -AGUUCGGG-----GUUCCGGg----------CCGGCU----CUUG- -5'
26682 3' -59.7 NC_005808.1 + 9468 0.67 0.34045
Target:  5'- aCAAGCCCgaucacggcgacauuCAGGGCCUuggguucauGGgCGAGGAUg -3'
miRNA:   3'- aGUUCGGG---------------GUUCCGGG---------CCgGCUCUUG- -5'
26682 3' -59.7 NC_005808.1 + 38202 0.67 0.337184
Target:  5'- gCAcG-CUCAAGGCCCGGCgCGAcGGCg -3'
miRNA:   3'- aGUuCgGGGUUCCGGGCCG-GCUcUUG- -5'
26682 3' -59.7 NC_005808.1 + 40353 0.67 0.337184
Target:  5'- gUCGAacuGCCggCCAAGGCCCGGCguuuauaccgCGAcaugGAGCg -3'
miRNA:   3'- -AGUU---CGG--GGUUCCGGGCCG----------GCU----CUUG- -5'
26682 3' -59.7 NC_005808.1 + 20167 0.67 0.329122
Target:  5'- aCGAGUCCgccgccguCAAGGCgUGGCUGGcGAACg -3'
miRNA:   3'- aGUUCGGG--------GUUCCGgGCCGGCU-CUUG- -5'
26682 3' -59.7 NC_005808.1 + 36243 0.67 0.329122
Target:  5'- cCAGcGCCCC--GGCCUucgGGCCGGGcGCu -3'
miRNA:   3'- aGUU-CGGGGuuCCGGG---CCGGCUCuUG- -5'
26682 3' -59.7 NC_005808.1 + 22465 0.68 0.313427
Target:  5'- cCAGGCCCCcgAAGGCgUGGCauuCGAcGACg -3'
miRNA:   3'- aGUUCGGGG--UUCCGgGCCG---GCUcUUG- -5'
26682 3' -59.7 NC_005808.1 + 1166 0.68 0.30883
Target:  5'- gUCAcGCCCCAcauagucucgccgccGGGgUCGGCCGGGu-- -3'
miRNA:   3'- -AGUuCGGGGU---------------UCCgGGCCGGCUCuug -5'
26682 3' -59.7 NC_005808.1 + 29086 0.68 0.305795
Target:  5'- cUCGGGCgCCGAGGUCaGGCCcgugcGGGACu -3'
miRNA:   3'- -AGUUCGgGGUUCCGGgCCGGc----UCUUG- -5'
26682 3' -59.7 NC_005808.1 + 37847 0.68 0.305795
Target:  5'- cCGAGaacaUCGcGGCCgUGGCCGAGAACa -3'
miRNA:   3'- aGUUCgg--GGUuCCGG-GCCGGCUCUUG- -5'
26682 3' -59.7 NC_005808.1 + 13502 0.68 0.298306
Target:  5'- gCAAGUCCCGcacGGGCCUGaccucggcGCcCGAGGAUg -3'
miRNA:   3'- aGUUCGGGGU---UCCGGGC--------CG-GCUCUUG- -5'
26682 3' -59.7 NC_005808.1 + 6339 0.68 0.298306
Target:  5'- ---cGCCCCAGccaaagcgcccGGCCCgaaGGCCGGGGc- -3'
miRNA:   3'- aguuCGGGGUU-----------CCGGG---CCGGCUCUug -5'
26682 3' -59.7 NC_005808.1 + 31542 0.68 0.298306
Target:  5'- uUCGAGCaguUCGucGCCaaugCGGCCGAGAACg -3'
miRNA:   3'- -AGUUCGg--GGUucCGG----GCCGGCUCUUG- -5'
26682 3' -59.7 NC_005808.1 + 35753 0.68 0.298306
Target:  5'- -gGGGCCUacgaaAAGGCCgucGCCGAGGGCa -3'
miRNA:   3'- agUUCGGGg----UUCCGGgc-CGGCUCUUG- -5'
26682 3' -59.7 NC_005808.1 + 676 0.69 0.262992
Target:  5'- cCAGGCCgCCuacggcGGCgCCGGCCGGGc-- -3'
miRNA:   3'- aGUUCGG-GGuu----CCG-GGCCGGCUCuug -5'
26682 3' -59.7 NC_005808.1 + 15156 0.69 0.249847
Target:  5'- aCcAGCgCCAGGGCCugCGGCCGccGGGCg -3'
miRNA:   3'- aGuUCGgGGUUCCGG--GCCGGCu-CUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.