Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26683 | 3' | -56.1 | NC_005808.1 | + | 24990 | 1.07 | 0.000834 |
Target: 5'- cAUCGAGGCCGGUAUCGACAACGCGCAg -3' miRNA: 3'- -UAGCUCCGGCCAUAGCUGUUGCGCGU- -5' |
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26683 | 3' | -56.1 | NC_005808.1 | + | 5451 | 0.78 | 0.106307 |
Target: 5'- -gCGAGGUCGGUAUCGACcaucACGcCGCGg -3' miRNA: 3'- uaGCUCCGGCCAUAGCUGu---UGC-GCGU- -5' |
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26683 | 3' | -56.1 | NC_005808.1 | + | 20621 | 0.75 | 0.1672 |
Target: 5'- cGUCGcAGGUCGGUGUCGGCc-UGCGCu -3' miRNA: 3'- -UAGC-UCCGGCCAUAGCUGuuGCGCGu -5' |
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26683 | 3' | -56.1 | NC_005808.1 | + | 37393 | 0.74 | 0.20263 |
Target: 5'- cUCGAcgugGGCaCGGUAgccggcaauaUCGACGACGUGCAg -3' miRNA: 3'- uAGCU----CCG-GCCAU----------AGCUGUUGCGCGU- -5' |
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26683 | 3' | -56.1 | NC_005808.1 | + | 2818 | 0.72 | 0.257581 |
Target: 5'- cGUCG-GGCCaGGUGcucgCGGCcACGCGCAg -3' miRNA: 3'- -UAGCuCCGG-CCAUa---GCUGuUGCGCGU- -5' |
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26683 | 3' | -56.1 | NC_005808.1 | + | 16351 | 0.71 | 0.300616 |
Target: 5'- -gCGGGuGCCcGUGccuUCGGCGACGCGCGc -3' miRNA: 3'- uaGCUC-CGGcCAU---AGCUGUUGCGCGU- -5' |
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26683 | 3' | -56.1 | NC_005808.1 | + | 5311 | 0.71 | 0.308307 |
Target: 5'- gGUCGAGGCC-GUAggccgCGAgcaCGugGCGCAg -3' miRNA: 3'- -UAGCUCCGGcCAUa----GCU---GUugCGCGU- -5' |
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26683 | 3' | -56.1 | NC_005808.1 | + | 5249 | 0.7 | 0.332274 |
Target: 5'- uUCGgccggcAGGUCGGgGUCGGCAAUGCGUc -3' miRNA: 3'- uAGC------UCCGGCCaUAGCUGUUGCGCGu -5' |
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26683 | 3' | -56.1 | NC_005808.1 | + | 9775 | 0.7 | 0.340562 |
Target: 5'- cGUUGcGGCUGGUGUaguccgacCGGCAgACGCGCAg -3' miRNA: 3'- -UAGCuCCGGCCAUA--------GCUGU-UGCGCGU- -5' |
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26683 | 3' | -56.1 | NC_005808.1 | + | 23270 | 0.7 | 0.357582 |
Target: 5'- gGUC-AGGUCGGUGUCGGCGuGCGC-CAc -3' miRNA: 3'- -UAGcUCCGGCCAUAGCUGU-UGCGcGU- -5' |
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26683 | 3' | -56.1 | NC_005808.1 | + | 23721 | 0.7 | 0.366313 |
Target: 5'- gGUCGcGGGCCaGUGccUCGGUGGCGCGCAg -3' miRNA: 3'- -UAGC-UCCGGcCAU--AGCUGUUGCGCGU- -5' |
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26683 | 3' | -56.1 | NC_005808.1 | + | 31906 | 0.7 | 0.37519 |
Target: 5'- cAUCGAGGCCGaGUGccugCGGCGuuucgaGCGCu -3' miRNA: 3'- -UAGCUCCGGC-CAUa---GCUGUug----CGCGu -5' |
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26683 | 3' | -56.1 | NC_005808.1 | + | 5575 | 0.69 | 0.415938 |
Target: 5'- uGUCGAGGCCGGcauacuccacgaauuUGgcccacUCGGCGGgGUGCGu -3' miRNA: 3'- -UAGCUCCGGCC---------------AU------AGCUGUUgCGCGU- -5' |
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26683 | 3' | -56.1 | NC_005808.1 | + | 4557 | 0.68 | 0.431413 |
Target: 5'- cUUGAGGCCGaaGUCGcCGAgGCGCu -3' miRNA: 3'- uAGCUCCGGCcaUAGCuGUUgCGCGu -5' |
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26683 | 3' | -56.1 | NC_005808.1 | + | 8124 | 0.68 | 0.431413 |
Target: 5'- -gCGcGGCCGGcguugGUUGugGGCGUGCGg -3' miRNA: 3'- uaGCuCCGGCCa----UAGCugUUGCGCGU- -5' |
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26683 | 3' | -56.1 | NC_005808.1 | + | 28337 | 0.68 | 0.431413 |
Target: 5'- cUCGAuGGCCuuGGccucGUCgGGCAGCGCGCGg -3' miRNA: 3'- uAGCU-CCGG--CCa---UAG-CUGUUGCGCGU- -5' |
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26683 | 3' | -56.1 | NC_005808.1 | + | 42044 | 0.68 | 0.441254 |
Target: 5'- gGUCGAGGCgUGGUuuuucagCGGCc-CGCGCAc -3' miRNA: 3'- -UAGCUCCG-GCCAua-----GCUGuuGCGCGU- -5' |
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26683 | 3' | -56.1 | NC_005808.1 | + | 17704 | 0.68 | 0.441254 |
Target: 5'- cUCG-GGCCGGgaaaugcccaUcgCGGCAagcuGCGCGCAu -3' miRNA: 3'- uAGCuCCGGCC----------AuaGCUGU----UGCGCGU- -5' |
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26683 | 3' | -56.1 | NC_005808.1 | + | 19060 | 0.68 | 0.441254 |
Target: 5'- -cCGAGGCC---AUCGACcGCGUGCGc -3' miRNA: 3'- uaGCUCCGGccaUAGCUGuUGCGCGU- -5' |
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26683 | 3' | -56.1 | NC_005808.1 | + | 6177 | 0.68 | 0.470491 |
Target: 5'- -gCGcAGGCCGGUcuugccgcagcGUuugcaggUGACGGCGCGCGg -3' miRNA: 3'- uaGC-UCCGGCCA-----------UA-------GCUGUUGCGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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