miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26685 3' -52.7 NC_005808.1 + 38596 0.66 0.810089
Target:  5'- uGGCCGgCGCGUUUU-GG-GC-GGACa -3'
miRNA:   3'- gCUGGCaGUGCAAAAgCCaCGuCCUG- -5'
26685 3' -52.7 NC_005808.1 + 40084 0.66 0.804222
Target:  5'- uGACCGgCACGcccagcccgaaCGGguUGCAGGACu -3'
miRNA:   3'- gCUGGCaGUGCaaaa-------GCC--ACGUCCUG- -5'
26685 3' -52.7 NC_005808.1 + 24332 0.66 0.780094
Target:  5'- aCGGCCGgCAaGUUcUCGGcGCAGGuCg -3'
miRNA:   3'- -GCUGGCaGUgCAAaAGCCaCGUCCuG- -5'
26685 3' -52.7 NC_005808.1 + 41296 0.66 0.770795
Target:  5'- uGGCCGUCGCccugggcgcggCGGUGU-GGGCg -3'
miRNA:   3'- gCUGGCAGUGcaaaa------GCCACGuCCUG- -5'
26685 3' -52.7 NC_005808.1 + 34487 0.67 0.759265
Target:  5'- -cGCCGgcCGCG----CGGUGCAGGGCc -3'
miRNA:   3'- gcUGGCa-GUGCaaaaGCCACGUCCUG- -5'
26685 3' -52.7 NC_005808.1 + 34399 0.67 0.724832
Target:  5'- uGGCCGcCAUGUcgcugacgaaCGG-GCAGGACg -3'
miRNA:   3'- gCUGGCaGUGCAaaa-------GCCaCGUCCUG- -5'
26685 3' -52.7 NC_005808.1 + 16111 0.69 0.648836
Target:  5'- aCGACCGgcugCACG---UCGGUggccccgacGUAGGACu -3'
miRNA:   3'- -GCUGGCa---GUGCaaaAGCCA---------CGUCCUG- -5'
26685 3' -52.7 NC_005808.1 + 3728 0.69 0.637509
Target:  5'- cCGuGCCGuUCACGc---CGGUGguGGGCa -3'
miRNA:   3'- -GC-UGGC-AGUGCaaaaGCCACguCCUG- -5'
26685 3' -52.7 NC_005808.1 + 8584 0.69 0.626176
Target:  5'- aGGCCG-CGCGUgcggccUGGUGCuGGAUa -3'
miRNA:   3'- gCUGGCaGUGCAaaa---GCCACGuCCUG- -5'
26685 3' -52.7 NC_005808.1 + 16148 0.71 0.482768
Target:  5'- gCGGCCG-CACGcUgaUGGUGguGGGCg -3'
miRNA:   3'- -GCUGGCaGUGCaAaaGCCACguCCUG- -5'
26685 3' -52.7 NC_005808.1 + 4354 0.72 0.471281
Target:  5'- uGGCCGUUGCGUUgcCGGUGCgcgugaaGGcGACg -3'
miRNA:   3'- gCUGGCAGUGCAAaaGCCACG-------UC-CUG- -5'
26685 3' -52.7 NC_005808.1 + 24155 1.1 0.001267
Target:  5'- gCGACCGUCACGUUUUCGGUGCAGGACu -3'
miRNA:   3'- -GCUGGCAGUGCAAAAGCCACGUCCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.