miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26686 3' -62.4 NC_005808.1 + 23103 0.66 0.317993
Target:  5'- -cCACgGUucGCaGCGGCCUgcCCACCGGc -3'
miRNA:   3'- caGUGgCGcuCG-CGCCGGA--GGUGGCU- -5'
26686 3' -62.4 NC_005808.1 + 25617 0.66 0.317993
Target:  5'- -cCACgGCG-GCGCGGUCgccagcagcgcgUCCACCu- -3'
miRNA:   3'- caGUGgCGCuCGCGCCGG------------AGGUGGcu -5'
26686 3' -62.4 NC_005808.1 + 27659 0.66 0.317993
Target:  5'- -cUACCcagGUGGGCGCcaCCUCCACCGu -3'
miRNA:   3'- caGUGG---CGCUCGCGccGGAGGUGGCu -5'
26686 3' -62.4 NC_005808.1 + 14307 0.66 0.317993
Target:  5'- cGUCGuuGCugaacuGGCGCGcGCCUUgGCUGAa -3'
miRNA:   3'- -CAGUggCGc-----UCGCGC-CGGAGgUGGCU- -5'
26686 3' -62.4 NC_005808.1 + 32347 0.66 0.317993
Target:  5'- -cCGCCGCccaggucGCuGCGGUCgCCGCCGAg -3'
miRNA:   3'- caGUGGCGcu-----CG-CGCCGGaGGUGGCU- -5'
26686 3' -62.4 NC_005808.1 + 16895 0.66 0.315724
Target:  5'- -cCGCCGCGgggcugguaugagcAGCGuuGCCgaaaUCCGCCGGc -3'
miRNA:   3'- caGUGGCGC--------------UCGCgcCGG----AGGUGGCU- -5'
26686 3' -62.4 NC_005808.1 + 33284 0.66 0.310478
Target:  5'- -gCGCCGaCGuGCGCcGCCaggUCGCCGAg -3'
miRNA:   3'- caGUGGC-GCuCGCGcCGGa--GGUGGCU- -5'
26686 3' -62.4 NC_005808.1 + 28567 0.66 0.310478
Target:  5'- -cCAUCGCG-GCGCGcacGUCggCCACCGGc -3'
miRNA:   3'- caGUGGCGCuCGCGC---CGGa-GGUGGCU- -5'
26686 3' -62.4 NC_005808.1 + 28883 0.66 0.309735
Target:  5'- cUCGCUGCuGGCGUaguugcuGGCCgUCGCCGAc -3'
miRNA:   3'- cAGUGGCGcUCGCG-------CCGGaGGUGGCU- -5'
26686 3' -62.4 NC_005808.1 + 23338 0.66 0.3031
Target:  5'- --aGCCGCGcaauuCGaCGGCCUcgCCGCCGAu -3'
miRNA:   3'- cagUGGCGCuc---GC-GCCGGA--GGUGGCU- -5'
26686 3' -62.4 NC_005808.1 + 2944 0.66 0.3031
Target:  5'- -aCACCGCGucGCGCGGCa--CGUCGAg -3'
miRNA:   3'- caGUGGCGCu-CGCGCCGgagGUGGCU- -5'
26686 3' -62.4 NC_005808.1 + 8578 0.66 0.3031
Target:  5'- cGUCguagGCCGCGcGUGCGGCCUgguGCUGGa -3'
miRNA:   3'- -CAG----UGGCGCuCGCGCCGGAgg-UGGCU- -5'
26686 3' -62.4 NC_005808.1 + 33565 0.66 0.3031
Target:  5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3'
miRNA:   3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5'
26686 3' -62.4 NC_005808.1 + 33493 0.66 0.3031
Target:  5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3'
miRNA:   3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5'
26686 3' -62.4 NC_005808.1 + 33397 0.66 0.3031
Target:  5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3'
miRNA:   3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5'
26686 3' -62.4 NC_005808.1 + 33349 0.66 0.3031
Target:  5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3'
miRNA:   3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5'
26686 3' -62.4 NC_005808.1 + 33253 0.66 0.3031
Target:  5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3'
miRNA:   3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5'
26686 3' -62.4 NC_005808.1 + 33205 0.66 0.3031
Target:  5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3'
miRNA:   3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5'
26686 3' -62.4 NC_005808.1 + 10343 0.66 0.3031
Target:  5'- cGUCGCUGCG-GCGUGuGCCUUCuucuCCc- -3'
miRNA:   3'- -CAGUGGCGCuCGCGC-CGGAGGu---GGcu -5'
26686 3' -62.4 NC_005808.1 + 34022 0.66 0.3031
Target:  5'- --gGCCGCacGCGCGGCCUacgaCGCCc- -3'
miRNA:   3'- cagUGGCGcuCGCGCCGGAg---GUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.