miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26687 3' -55.8 NC_005808.1 + 26859 0.66 0.611846
Target:  5'- aGGUGcggUAUGUCGagCGCAUgGCCu- -3'
miRNA:   3'- aCCGCa--AUGCAGCagGCGUAgCGGuu -5'
26687 3' -55.8 NC_005808.1 + 28290 0.66 0.611846
Target:  5'- aGGCGcgcgccagUUcagcaacgACGUgGgCCGCAUCGCCGAc -3'
miRNA:   3'- aCCGC--------AA--------UGCAgCaGGCGUAGCGGUU- -5'
26687 3' -55.8 NC_005808.1 + 19148 0.66 0.589425
Target:  5'- cGGCGUgUACGcgCGaaccaUCCGCAUCccgGCCGg -3'
miRNA:   3'- aCCGCA-AUGCa-GC-----AGGCGUAG---CGGUu -5'
26687 3' -55.8 NC_005808.1 + 7544 0.66 0.589425
Target:  5'- cGGCGgcgUGC-UCGaUCUGCggCGCCAc -3'
miRNA:   3'- aCCGCa--AUGcAGC-AGGCGuaGCGGUu -5'
26687 3' -55.8 NC_005808.1 + 6989 0.66 0.578267
Target:  5'- -cGCGgaaGCG-CGUCCGCGcccgauUCGCCAu -3'
miRNA:   3'- acCGCaa-UGCaGCAGGCGU------AGCGGUu -5'
26687 3' -55.8 NC_005808.1 + 32298 0.67 0.545104
Target:  5'- aGcGCGUUGCG-CGaCCuCAUCGCCGc -3'
miRNA:   3'- aC-CGCAAUGCaGCaGGcGUAGCGGUu -5'
26687 3' -55.8 NC_005808.1 + 6537 0.68 0.491345
Target:  5'- cGGgGUcguCGUCGcCCGaAUCGCCAGg -3'
miRNA:   3'- aCCgCAau-GCAGCaGGCgUAGCGGUU- -5'
26687 3' -55.8 NC_005808.1 + 29682 0.68 0.491345
Target:  5'- -aGCGUUAUGggcgcggcCGagCGCAUCGCCAAa -3'
miRNA:   3'- acCGCAAUGCa-------GCagGCGUAGCGGUU- -5'
26687 3' -55.8 NC_005808.1 + 14380 0.68 0.491345
Target:  5'- cGcGCGUg--GUCGUCgGCGUgGCCGAc -3'
miRNA:   3'- aC-CGCAaugCAGCAGgCGUAgCGGUU- -5'
26687 3' -55.8 NC_005808.1 + 37082 0.68 0.479841
Target:  5'- gGGCGgccgGCGU-GUCCuacgacuuuggcaGCAUCGCCGu -3'
miRNA:   3'- aCCGCaa--UGCAgCAGG-------------CGUAGCGGUu -5'
26687 3' -55.8 NC_005808.1 + 5443 0.7 0.382985
Target:  5'- cGGCGUggGCGagGUCgGUAUCGaCCAu -3'
miRNA:   3'- aCCGCAa-UGCagCAGgCGUAGC-GGUu -5'
26687 3' -55.8 NC_005808.1 + 5054 0.7 0.379351
Target:  5'- uUGGCGaccgcugcauugAUGUUGUCgGCAUUGCCGAc -3'
miRNA:   3'- -ACCGCaa----------UGCAGCAGgCGUAGCGGUU- -5'
26687 3' -55.8 NC_005808.1 + 10030 0.75 0.16137
Target:  5'- cGGUGUccugaUACGUCGgagCgGCAUCGCCGg -3'
miRNA:   3'- aCCGCA-----AUGCAGCa--GgCGUAGCGGUu -5'
26687 3' -55.8 NC_005808.1 + 23629 1.06 0.001001
Target:  5'- cUGGCGUUACGUCGUCCGCAUCGCCAAu -3'
miRNA:   3'- -ACCGCAAUGCAGCAGGCGUAGCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.