miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26688 3' -57.9 NC_005808.1 + 37239 0.74 0.160896
Target:  5'- cUGGGCgCGGugC-AGGCGGCCACGCa- -3'
miRNA:   3'- -ACUUG-GUCugGgUCCGCUGGUGCGac -5'
26688 3' -57.9 NC_005808.1 + 27430 0.67 0.423284
Target:  5'- cGcACCGcGCCC-GGCGGCCgcaggcccugGCGCUGg -3'
miRNA:   3'- aCuUGGUcUGGGuCCGCUGG----------UGCGAC- -5'
26688 3' -57.9 NC_005808.1 + 3862 0.66 0.46249
Target:  5'- uUGuACCAGGCgCCGucgcuGuaGGCCGCGCUGc -3'
miRNA:   3'- -ACuUGGUCUG-GGU-----CcgCUGGUGCGAC- -5'
26688 3' -57.9 NC_005808.1 + 17104 0.66 0.46249
Target:  5'- -cGGCCGGGCCUugGGGCuuGACCACGa-- -3'
miRNA:   3'- acUUGGUCUGGG--UCCG--CUGGUGCgac -5'
26688 3' -57.9 NC_005808.1 + 28241 0.66 0.46249
Target:  5'- cGggUCGGACugcgCCAGGCucACCAUGUUGc -3'
miRNA:   3'- aCuuGGUCUG----GGUCCGc-UGGUGCGAC- -5'
26688 3' -57.9 NC_005808.1 + 37500 0.66 0.46249
Target:  5'- cGcACCGGACgCUGGGcCGGCCGC-CUGu -3'
miRNA:   3'- aCuUGGUCUG-GGUCC-GCUGGUGcGAC- -5'
26688 3' -57.9 NC_005808.1 + 29455 0.66 0.472587
Target:  5'- gUGcuCCuGGCaCCAGGCGACgaaGCGCg- -3'
miRNA:   3'- -ACuuGGuCUG-GGUCCGCUGg--UGCGac -5'
26688 3' -57.9 NC_005808.1 + 29010 0.66 0.493108
Target:  5'- cGAcgUAGGCgaCCAGGCG-CCGCGCUu -3'
miRNA:   3'- aCUugGUCUG--GGUCCGCuGGUGCGAc -5'
26688 3' -57.9 NC_005808.1 + 32934 0.66 0.503521
Target:  5'- -cGGCUguucGGCCaGGGCGACCACgGCUGc -3'
miRNA:   3'- acUUGGu---CUGGgUCCGCUGGUG-CGAC- -5'
26688 3' -57.9 NC_005808.1 + 23521 0.67 0.413797
Target:  5'- cGAGCgCGccuUCCAGGCGGCgCACGCg- -3'
miRNA:   3'- aCUUG-GUcu-GGGUCCGCUG-GUGCGac -5'
26688 3' -57.9 NC_005808.1 + 24272 0.67 0.404443
Target:  5'- uUGAGCguGGCgCCGGacaGUGACCACGUg- -3'
miRNA:   3'- -ACUUGguCUG-GGUC---CGCUGGUGCGac -5'
26688 3' -57.9 NC_005808.1 + 39744 0.71 0.24588
Target:  5'- cGAACCAGGCCCcucgcuggugcuGGCGccGCUGCGCg- -3'
miRNA:   3'- aCUUGGUCUGGGu-----------CCGC--UGGUGCGac -5'
26688 3' -57.9 NC_005808.1 + 8533 0.7 0.295646
Target:  5'- cGAACUu-GCCCAGGUaucgcaGGCCGCGCUc -3'
miRNA:   3'- aCUUGGucUGGGUCCG------CUGGUGCGAc -5'
26688 3' -57.9 NC_005808.1 + 16792 0.68 0.363177
Target:  5'- aUGGucGCCAGuugccaguuggucgcGCCCAGGCGGCgcaguuCACGCg- -3'
miRNA:   3'- -ACU--UGGUC---------------UGGGUCCGCUG------GUGCGac -5'
26688 3' -57.9 NC_005808.1 + 38194 0.68 0.368392
Target:  5'- cGAcuGCCgcacgcucaAGGCCCGGcGCGACgGCGcCUGg -3'
miRNA:   3'- aCU--UGG---------UCUGGGUC-CGCUGgUGC-GAC- -5'
26688 3' -57.9 NC_005808.1 + 40837 0.68 0.377195
Target:  5'- cGAcgcGCCAGGCgCAGGCcGGCCAUGa-- -3'
miRNA:   3'- aCU---UGGUCUGgGUCCG-CUGGUGCgac -5'
26688 3' -57.9 NC_005808.1 + 16581 0.68 0.377195
Target:  5'- cGAcgcGCCGGA-CgAGGcCGACCACGCg- -3'
miRNA:   3'- aCU---UGGUCUgGgUCC-GCUGGUGCGac -5'
26688 3' -57.9 NC_005808.1 + 2001 0.68 0.38614
Target:  5'- cUGAuCUugAGGCCCAGGCG-CU-CGCUGg -3'
miRNA:   3'- -ACUuGG--UCUGGGUCCGCuGGuGCGAC- -5'
26688 3' -57.9 NC_005808.1 + 23726 0.67 0.404443
Target:  5'- cGGGCCAGugCCucgguGGCGcgcagcagcGCCAUGCc- -3'
miRNA:   3'- aCUUGGUCugGGu----CCGC---------UGGUGCGac -5'
26688 3' -57.9 NC_005808.1 + 16969 0.66 0.503521
Target:  5'- cGAGgUGGACgCGcugcuGGCGACCGCGCc- -3'
miRNA:   3'- aCUUgGUCUGgGU-----CCGCUGGUGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.