miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26690 3' -53.5 NC_005808.1 + 22768 1.09 0.000921
Target:  5'- gAACAAAACCGGCCUGGGCAAUCACCCc -3'
miRNA:   3'- -UUGUUUUGGCCGGACCCGUUAGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 16416 0.77 0.170009
Target:  5'- -gUAGGACaCGGCCgcgGGGUAAUCGCCg -3'
miRNA:   3'- uuGUUUUG-GCCGGa--CCCGUUAGUGGg -5'
26690 3' -53.5 NC_005808.1 + 11831 0.77 0.171951
Target:  5'- gAACAGAccggccgcgccgcgGuuGGCCUGGGCGAaccccgcgccaauaUCGCCCa -3'
miRNA:   3'- -UUGUUU--------------UggCCGGACCCGUU--------------AGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 34954 0.77 0.174901
Target:  5'- cGGCAagGAGCCGGCgUGGGuCGAgccgCGCCCc -3'
miRNA:   3'- -UUGU--UUUGGCCGgACCC-GUUa---GUGGG- -5'
26690 3' -53.5 NC_005808.1 + 25361 0.77 0.179918
Target:  5'- cGCAuAGCCGGCCaccGGGCAggCGCCa -3'
miRNA:   3'- uUGUuUUGGCCGGa--CCCGUuaGUGGg -5'
26690 3' -53.5 NC_005808.1 + 17287 0.77 0.190336
Target:  5'- cACGAAGCCGGCgCcgcGGGCGcgCAUCCa -3'
miRNA:   3'- uUGUUUUGGCCG-Ga--CCCGUuaGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 14053 0.75 0.243964
Target:  5'- cGCGAAAgcCCGGCgCUGGGCGucGUUGCCUa -3'
miRNA:   3'- uUGUUUU--GGCCG-GACCCGU--UAGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 41880 0.75 0.250642
Target:  5'- cGGCAAAGCCGccccuauCCUGGGCGGUaucuugggCGCCCg -3'
miRNA:   3'- -UUGUUUUGGCc------GGACCCGUUA--------GUGGG- -5'
26690 3' -53.5 NC_005808.1 + 17258 0.74 0.293907
Target:  5'- uGCGAAcugGCCGGCCUGGaCAAUC-CCg -3'
miRNA:   3'- uUGUUU---UGGCCGGACCcGUUAGuGGg -5'
26690 3' -53.5 NC_005808.1 + 688 0.73 0.317636
Target:  5'- cGGCGGcGCCGGCC-GGGC---CGCCCa -3'
miRNA:   3'- -UUGUUuUGGCCGGaCCCGuuaGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 6392 0.73 0.334241
Target:  5'- cGCAGgccGGCCGGCCcGGuGUAGUCgcgGCCCa -3'
miRNA:   3'- uUGUU---UUGGCCGGaCC-CGUUAG---UGGG- -5'
26690 3' -53.5 NC_005808.1 + 18087 0.72 0.342779
Target:  5'- gGACGuGAUCGGCgUGGGCGccaGCCCc -3'
miRNA:   3'- -UUGUuUUGGCCGgACCCGUuagUGGG- -5'
26690 3' -53.5 NC_005808.1 + 31023 0.71 0.387788
Target:  5'- gGGCuu-GCCGGCC-GaGGCAAUCGCgCg -3'
miRNA:   3'- -UUGuuuUGGCCGGaC-CCGUUAGUGgG- -5'
26690 3' -53.5 NC_005808.1 + 16095 0.71 0.387788
Target:  5'- gAAUGAuGCCGGCUUGcgagucGGCGAggaUCACCCg -3'
miRNA:   3'- -UUGUUuUGGCCGGAC------CCGUU---AGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 9097 0.71 0.416596
Target:  5'- cGCGAGGCCGuucuuGCCggUGGGCAgguAUCGCCa -3'
miRNA:   3'- uUGUUUUGGC-----CGG--ACCCGU---UAGUGGg -5'
26690 3' -53.5 NC_005808.1 + 19792 0.71 0.426485
Target:  5'- uGCcAGGCCGGCCcGGuaGAaCACCCg -3'
miRNA:   3'- uUGuUUUGGCCGGaCCcgUUaGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 22814 0.7 0.456966
Target:  5'- uACcGGGCCGGCCU-GGCAAUCAgUg -3'
miRNA:   3'- uUGuUUUGGCCGGAcCCGUUAGUgGg -5'
26690 3' -53.5 NC_005808.1 + 2361 0.7 0.456966
Target:  5'- cGCAAu-UCGGCCUGcacguGGCAGaCGCCCg -3'
miRNA:   3'- uUGUUuuGGCCGGAC-----CCGUUaGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 40174 0.7 0.467384
Target:  5'- -uCGAGGCCGGCCUGcuGCcGUaCACCUa -3'
miRNA:   3'- uuGUUUUGGCCGGACc-CGuUA-GUGGG- -5'
26690 3' -53.5 NC_005808.1 + 22479 0.7 0.477923
Target:  5'- aGGCGGAACCaggggcGGgCUGGGCuGGUCauGCCCg -3'
miRNA:   3'- -UUGUUUUGG------CCgGACCCG-UUAG--UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.