miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26690 3' -53.5 NC_005808.1 + 688 0.73 0.317636
Target:  5'- cGGCGGcGCCGGCC-GGGC---CGCCCa -3'
miRNA:   3'- -UUGUUuUGGCCGGaCCCGuuaGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 1555 0.66 0.691644
Target:  5'- gAAUucGACCGGCUggaUGGGCA--UAUCCu -3'
miRNA:   3'- -UUGuuUUGGCCGG---ACCCGUuaGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 2043 0.69 0.543376
Target:  5'- cGAUAGAACaCGGCgCgcaauuccucgGGGUcGUCGCCCa -3'
miRNA:   3'- -UUGUUUUG-GCCG-Ga----------CCCGuUAGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 2361 0.7 0.456966
Target:  5'- cGCAAu-UCGGCCUGcacguGGCAGaCGCCCg -3'
miRNA:   3'- uUGUUuuGGCCGGAC-----CCGUUaGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 4036 0.67 0.657427
Target:  5'- -uCAAAGCCGGCCgcggcgaGcGGCAGgccagCgGCCCa -3'
miRNA:   3'- uuGUUUUGGCCGGa------C-CCGUUa----G-UGGG- -5'
26690 3' -53.5 NC_005808.1 + 4092 0.67 0.622979
Target:  5'- ---cAGGCCGGCCaggUGGGCGG-CGCUg -3'
miRNA:   3'- uuguUUUGGCCGG---ACCCGUUaGUGGg -5'
26690 3' -53.5 NC_005808.1 + 5524 0.67 0.645954
Target:  5'- gGACAc-GCCGGCCgcccaGGUuccgcccaGGUCGCCCg -3'
miRNA:   3'- -UUGUuuUGGCCGGac---CCG--------UUAGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 6264 0.66 0.702941
Target:  5'- uGCGGuugauCUGcGCgCUGGGCAggccgaacagGUCGCCCa -3'
miRNA:   3'- uUGUUuu---GGC-CG-GACCCGU----------UAGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 6392 0.73 0.334241
Target:  5'- cGCAGgccGGCCGGCCcGGuGUAGUCgcgGCCCa -3'
miRNA:   3'- uUGUU---UUGGCCGGaCC-CGUUAG---UGGG- -5'
26690 3' -53.5 NC_005808.1 + 9097 0.71 0.416596
Target:  5'- cGCGAGGCCGuucuuGCCggUGGGCAgguAUCGCCa -3'
miRNA:   3'- uUGUUUUGGC-----CGG--ACCCGU---UAGUGGg -5'
26690 3' -53.5 NC_005808.1 + 11831 0.77 0.171951
Target:  5'- gAACAGAccggccgcgccgcgGuuGGCCUGGGCGAaccccgcgccaauaUCGCCCa -3'
miRNA:   3'- -UUGUUU--------------UggCCGGACCCGUU--------------AGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 12192 0.66 0.680284
Target:  5'- gAACGAAACCGGCCcGcGCugccuGCCCc -3'
miRNA:   3'- -UUGUUUUGGCCGGaCcCGuuag-UGGG- -5'
26690 3' -53.5 NC_005808.1 + 12930 0.67 0.622979
Target:  5'- cACAcgGCCGcGCCcugcUGGGCAacggcuaccucAUCAUCCc -3'
miRNA:   3'- uUGUuuUGGC-CGG----ACCCGU-----------UAGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 13125 0.68 0.577217
Target:  5'- cGCGGAACUGGCCgc-GCGcuucGUCGCCUg -3'
miRNA:   3'- uUGUUUUGGCCGGaccCGU----UAGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 14053 0.75 0.243964
Target:  5'- cGCGAAAgcCCGGCgCUGGGCGucGUUGCCUa -3'
miRNA:   3'- uUGUUUU--GGCCG-GACCCGU--UAGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 14349 0.66 0.714163
Target:  5'- cGCAAcauGgUGaGCCUGGcGCAGUCcgACCCg -3'
miRNA:   3'- uUGUUu--UgGC-CGGACC-CGUUAG--UGGG- -5'
26690 3' -53.5 NC_005808.1 + 16095 0.71 0.387788
Target:  5'- gAAUGAuGCCGGCUUGcgagucGGCGAggaUCACCCg -3'
miRNA:   3'- -UUGUUuUGGCCGGAC------CCGUU---AGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 16416 0.77 0.170009
Target:  5'- -gUAGGACaCGGCCgcgGGGUAAUCGCCg -3'
miRNA:   3'- uuGUUUUG-GCCGGa--CCCGUUAGUGGg -5'
26690 3' -53.5 NC_005808.1 + 17258 0.74 0.293907
Target:  5'- uGCGAAcugGCCGGCCUGGaCAAUC-CCg -3'
miRNA:   3'- uUGUUU---UGGCCGGACCcGUUAGuGGg -5'
26690 3' -53.5 NC_005808.1 + 17287 0.77 0.190336
Target:  5'- cACGAAGCCGGCgCcgcGGGCGcgCAUCCa -3'
miRNA:   3'- uUGUUUUGGCCG-Ga--CCCGUuaGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.