miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26690 3' -53.5 NC_005808.1 + 35437 0.67 0.642509
Target:  5'- cAGCGcguCgGGCCUGGGCuucaacgucaugagCGCCCu -3'
miRNA:   3'- -UUGUuuuGgCCGGACCCGuua-----------GUGGG- -5'
26690 3' -53.5 NC_005808.1 + 38516 0.67 0.634468
Target:  5'- cACcuGGCCGGCCUGauGGCuaccAAUCcCCCc -3'
miRNA:   3'- uUGuuUUGGCCGGAC--CCG----UUAGuGGG- -5'
26690 3' -53.5 NC_005808.1 + 12930 0.67 0.622979
Target:  5'- cACAcgGCCGcGCCcugcUGGGCAacggcuaccucAUCAUCCc -3'
miRNA:   3'- uUGUuuUGGC-CGG----ACCCGU-----------UAGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 4092 0.67 0.622979
Target:  5'- ---cAGGCCGGCCaggUGGGCGG-CGCUg -3'
miRNA:   3'- uuguUUUGGCCGG---ACCCGUUaGUGGg -5'
26690 3' -53.5 NC_005808.1 + 31684 0.67 0.622979
Target:  5'- uGC-AAACCGGC--GGGCAGgUCGCCa -3'
miRNA:   3'- uUGuUUUGGCCGgaCCCGUU-AGUGGg -5'
26690 3' -53.5 NC_005808.1 + 19813 0.68 0.601183
Target:  5'- uGCu-GACCGGCCcgcaGGGCGuugaccaaucggcccUCACCCu -3'
miRNA:   3'- uUGuuUUGGCCGGa---CCCGUu--------------AGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 24570 0.68 0.588607
Target:  5'- uGGCGAGGCCGGCCacggucGGGCcGUCcggcguguccuuGCCg -3'
miRNA:   3'- -UUGUUUUGGCCGGa-----CCCGuUAG------------UGGg -5'
26690 3' -53.5 NC_005808.1 + 13125 0.68 0.577217
Target:  5'- cGCGGAACUGGCCgc-GCGcuucGUCGCCUg -3'
miRNA:   3'- uUGUUUUGGCCGGaccCGU----UAGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 18904 0.68 0.554592
Target:  5'- gGGCGcuACCGGCCUGuacguguccGGCccgaccgagGGUCGCCUg -3'
miRNA:   3'- -UUGUuuUGGCCGGAC---------CCG---------UUAGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 29412 0.68 0.554592
Target:  5'- uACAAcGCCGGCCaaGGGC----GCCCa -3'
miRNA:   3'- uUGUUuUGGCCGGa-CCCGuuagUGGG- -5'
26690 3' -53.5 NC_005808.1 + 2043 0.69 0.543376
Target:  5'- cGAUAGAACaCGGCgCgcaauuccucgGGGUcGUCGCCCa -3'
miRNA:   3'- -UUGUUUUG-GCCG-Ga----------CCCGuUAGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 37716 0.69 0.532235
Target:  5'- aAACGAGGCCGccgucgccGCgCUGGGCAAcgACCUg -3'
miRNA:   3'- -UUGUUUUGGC--------CG-GACCCGUUagUGGG- -5'
26690 3' -53.5 NC_005808.1 + 41286 0.69 0.521178
Target:  5'- ------gUCGGCCUGguGGCcGUCGCCCu -3'
miRNA:   3'- uuguuuuGGCCGGAC--CCGuUAGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 22385 0.69 0.510211
Target:  5'- cAACA--GCCGGCCgcGGGCg--CugCCa -3'
miRNA:   3'- -UUGUuuUGGCCGGa-CCCGuuaGugGG- -5'
26690 3' -53.5 NC_005808.1 + 31615 0.69 0.50694
Target:  5'- uGCAAu-CCGGCCUGGccgaacagguggccGCAGUguCCCc -3'
miRNA:   3'- uUGUUuuGGCCGGACC--------------CGUUAguGGG- -5'
26690 3' -53.5 NC_005808.1 + 22479 0.7 0.477923
Target:  5'- aGGCGGAACCaggggcGGgCUGGGCuGGUCauGCCCg -3'
miRNA:   3'- -UUGUUUUGG------CCgGACCCG-UUAG--UGGG- -5'
26690 3' -53.5 NC_005808.1 + 40174 0.7 0.467384
Target:  5'- -uCGAGGCCGGCCUGcuGCcGUaCACCUa -3'
miRNA:   3'- uuGUUUUGGCCGGACc-CGuUA-GUGGG- -5'
26690 3' -53.5 NC_005808.1 + 22814 0.7 0.456966
Target:  5'- uACcGGGCCGGCCU-GGCAAUCAgUg -3'
miRNA:   3'- uUGuUUUGGCCGGAcCCGUUAGUgGg -5'
26690 3' -53.5 NC_005808.1 + 2361 0.7 0.456966
Target:  5'- cGCAAu-UCGGCCUGcacguGGCAGaCGCCCg -3'
miRNA:   3'- uUGUUuuGGCCGGAC-----CCGUUaGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 19792 0.71 0.426485
Target:  5'- uGCcAGGCCGGCCcGGuaGAaCACCCg -3'
miRNA:   3'- uUGuUUUGGCCGGaCCcgUUaGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.