miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26691 3' -60.3 NC_005808.1 + 37076 0.66 0.390408
Target:  5'- gAACCUGGGcgGCCggcgUGUCCuACGacuuuggcagcaucGCCGu -3'
miRNA:   3'- -UUGGACCCaaCGGa---GCAGG-UGC--------------CGGC- -5'
26691 3' -60.3 NC_005808.1 + 992 0.66 0.365014
Target:  5'- cGCCUGGcGgUGCCgugguucaccgcagCGUcgaacaccuggaaggCCACGGCCGg -3'
miRNA:   3'- uUGGACC-CaACGGa-------------GCA---------------GGUGCCGGC- -5'
26691 3' -60.3 NC_005808.1 + 41288 0.67 0.302542
Target:  5'- cGGCCUGGug-GCCgUCGcCCugGGCgCGg -3'
miRNA:   3'- -UUGGACCcaaCGG-AGCaGGugCCG-GC- -5'
26691 3' -60.3 NC_005808.1 + 30567 0.69 0.241084
Target:  5'- cACgCUGGGcaaGaCCUCGccggCCACGGCCGc -3'
miRNA:   3'- uUG-GACCCaa-C-GGAGCa---GGUGCCGGC- -5'
26691 3' -60.3 NC_005808.1 + 10787 0.69 0.239226
Target:  5'- cGGCCUGGGaUUgcauguacugcugcGCCUCGg-CGCGGCUGa -3'
miRNA:   3'- -UUGGACCC-AA--------------CGGAGCagGUGCCGGC- -5'
26691 3' -60.3 NC_005808.1 + 38546 0.71 0.171027
Target:  5'- -cCCUGGGccgcuggccUGCCgcUCG-CCGCGGCCGg -3'
miRNA:   3'- uuGGACCCa--------ACGG--AGCaGGUGCCGGC- -5'
26691 3' -60.3 NC_005808.1 + 73 0.71 0.157677
Target:  5'- cGCCUaGGGUUGCCUCGaa-GCGaGCCa -3'
miRNA:   3'- uUGGA-CCCAACGGAGCaggUGC-CGGc -5'
26691 3' -60.3 NC_005808.1 + 8413 0.73 0.116448
Target:  5'- cGGCCaGGGccgUGCgCUUGUCUACGGCCu -3'
miRNA:   3'- -UUGGaCCCa--ACG-GAGCAGGUGCCGGc -5'
26691 3' -60.3 NC_005808.1 + 20236 0.74 0.101235
Target:  5'- uGGCCuUGGG-UGCCUUGcUCCugGGUCGg -3'
miRNA:   3'- -UUGG-ACCCaACGGAGC-AGGugCCGGC- -5'
26691 3' -60.3 NC_005808.1 + 22647 1.06 0.000337
Target:  5'- aAACCUGGGUUGCCUCGUCCACGGCCGa -3'
miRNA:   3'- -UUGGACCCAACGGAGCAGGUGCCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.