Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 26693 | 3' | -58.3 | NC_005808.1 | + | 15129 | 0.71 | 0.22703 |
|
Target: 5'- aGGCCCGaccccaUGCUGGcgGCggaugcgcccaGGGCGACGGCu -3' miRNA: 3'- -UUGGGCg-----AUGACCa-CG-----------CCCGUUGCUG- -5' |
|||||||
| 26693 | 3' | -58.3 | NC_005808.1 | + | 20086 | 0.71 | 0.215227 |
|
Target: 5'- uGCUCGCUGCgGGgaugaugGCGGGCA-UGACc -3' miRNA: 3'- uUGGGCGAUGaCCa------CGCCCGUuGCUG- -5' |
|||||||
| 26693 | 3' | -58.3 | NC_005808.1 | + | 18536 | 0.71 | 0.198512 |
|
Target: 5'- --gCCGCUACU-GUGCGcGGCAugGAa -3' miRNA: 3'- uugGGCGAUGAcCACGC-CCGUugCUg -5' |
|||||||
| 26693 | 3' | -58.3 | NC_005808.1 | + | 40377 | 0.72 | 0.188006 |
|
Target: 5'- cGCCUGCUGCgcgUGGUGCuacccgacgaGGGCGuCGGCa -3' miRNA: 3'- uUGGGCGAUG---ACCACG----------CCCGUuGCUG- -5' |
|||||||
| 26693 | 3' | -58.3 | NC_005808.1 | + | 23564 | 0.72 | 0.168457 |
|
Target: 5'- cGACaUCGCcgGCaGGUGCGGGCGggggGCGACg -3' miRNA: 3'- -UUG-GGCGa-UGaCCACGCCCGU----UGCUG- -5' |
|||||||
| 26693 | 3' | -58.3 | NC_005808.1 | + | 25759 | 0.77 | 0.082802 |
|
Target: 5'- gGGCgCGCUGCUGG-GCGGcgGCAACGAUg -3' miRNA: 3'- -UUGgGCGAUGACCaCGCC--CGUUGCUG- -5' |
|||||||
| 26693 | 3' | -58.3 | NC_005808.1 | + | 14413 | 0.77 | 0.075882 |
|
Target: 5'- aGGCgCCGCaccUGCUGGgcGUGGGCAACGGCg -3' miRNA: 3'- -UUG-GGCG---AUGACCa-CGCCCGUUGCUG- -5' |
|||||||
| 26693 | 3' | -58.3 | NC_005808.1 | + | 40510 | 0.77 | 0.073486 |
|
Target: 5'- gGGCgCGCUACauggacgacaucgUGGUGCuGGGCGACGACc -3' miRNA: 3'- -UUGgGCGAUG-------------ACCACG-CCCGUUGCUG- -5' |
|||||||
| 26693 | 3' | -58.3 | NC_005808.1 | + | 22313 | 1.07 | 0.000379 |
|
Target: 5'- cAACCCGCUACUGGUGCGGGCAACGACg -3' miRNA: 3'- -UUGGGCGAUGACCACGCCCGUUGCUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home