Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 26693 | 3' | -58.3 | NC_005808.1 | + | 34198 | 0.66 | 0.422829 |
|
Target: 5'- uGCUCGCUGCccgacacGUGGGCGGCGAUu -3' miRNA: 3'- uUGGGCGAUGacca---CGCCCGUUGCUG- -5' |
|||||||
| 26693 | 3' | -58.3 | NC_005808.1 | + | 35186 | 0.68 | 0.324652 |
|
Target: 5'- cGCCCGCUGCUcuauacccuguccGGUcuguauuCGGGCGucaACGACg -3' miRNA: 3'- uUGGGCGAUGA-------------CCAc------GCCCGU---UGCUG- -5' |
|||||||
| 26693 | 3' | -58.3 | NC_005808.1 | + | 35860 | 0.66 | 0.462324 |
|
Target: 5'- -uUCCGCUAUUGaGcGCGGcggcccagcGCAGCGGCu -3' miRNA: 3'- uuGGGCGAUGAC-CaCGCC---------CGUUGCUG- -5' |
|||||||
| 26693 | 3' | -58.3 | NC_005808.1 | + | 36045 | 0.68 | 0.34186 |
|
Target: 5'- gGAUgCGCUGacgcCUGGcgauuCGGGCGACGACg -3' miRNA: 3'- -UUGgGCGAU----GACCac---GCCCGUUGCUG- -5' |
|||||||
| 26693 | 3' | -58.3 | NC_005808.1 | + | 39044 | 0.69 | 0.279796 |
|
Target: 5'- cAGCCCGCUGCUGcGcUGUucgGcGGCAGCuGGCa -3' miRNA: 3'- -UUGGGCGAUGAC-C-ACG---C-CCGUUG-CUG- -5' |
|||||||
| 26693 | 3' | -58.3 | NC_005808.1 | + | 39660 | 0.67 | 0.403856 |
|
Target: 5'- cGugCCGCgcgACgcGGUGUGGGC--CGGCa -3' miRNA: 3'- -UugGGCGa--UGa-CCACGCCCGuuGCUG- -5' |
|||||||
| 26693 | 3' | -58.3 | NC_005808.1 | + | 40377 | 0.72 | 0.188006 |
|
Target: 5'- cGCCUGCUGCgcgUGGUGCuacccgacgaGGGCGuCGGCa -3' miRNA: 3'- uUGGGCGAUG---ACCACG----------CCCGUuGCUG- -5' |
|||||||
| 26693 | 3' | -58.3 | NC_005808.1 | + | 40510 | 0.77 | 0.073486 |
|
Target: 5'- gGGCgCGCUACauggacgacaucgUGGUGCuGGGCGACGACc -3' miRNA: 3'- -UUGgGCGAUG-------------ACCACG-CCCGUUGCUG- -5' |
|||||||
| 26693 | 3' | -58.3 | NC_005808.1 | + | 41597 | 0.67 | 0.367568 |
|
Target: 5'- -uCCCgGCcAgUGGcGCGGGCAGCGGg -3' miRNA: 3'- uuGGG-CGaUgACCaCGCCCGUUGCUg -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home