miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26693 3' -58.3 NC_005808.1 + 22313 1.07 0.000379
Target:  5'- cAACCCGCUACUGGUGCGGGCAACGACg -3'
miRNA:   3'- -UUGGGCGAUGACCACGCCCGUUGCUG- -5'
26693 3' -58.3 NC_005808.1 + 40510 0.77 0.073486
Target:  5'- gGGCgCGCUACauggacgacaucgUGGUGCuGGGCGACGACc -3'
miRNA:   3'- -UUGgGCGAUG-------------ACCACG-CCCGUUGCUG- -5'
26693 3' -58.3 NC_005808.1 + 14413 0.77 0.075882
Target:  5'- aGGCgCCGCaccUGCUGGgcGUGGGCAACGGCg -3'
miRNA:   3'- -UUG-GGCG---AUGACCa-CGCCCGUUGCUG- -5'
26693 3' -58.3 NC_005808.1 + 25759 0.77 0.082802
Target:  5'- gGGCgCGCUGCUGG-GCGGcgGCAACGAUg -3'
miRNA:   3'- -UUGgGCGAUGACCaCGCC--CGUUGCUG- -5'
26693 3' -58.3 NC_005808.1 + 23564 0.72 0.168457
Target:  5'- cGACaUCGCcgGCaGGUGCGGGCGggggGCGACg -3'
miRNA:   3'- -UUG-GGCGa-UGaCCACGCCCGU----UGCUG- -5'
26693 3' -58.3 NC_005808.1 + 40377 0.72 0.188006
Target:  5'- cGCCUGCUGCgcgUGGUGCuacccgacgaGGGCGuCGGCa -3'
miRNA:   3'- uUGGGCGAUG---ACCACG----------CCCGUuGCUG- -5'
26693 3' -58.3 NC_005808.1 + 18536 0.71 0.198512
Target:  5'- --gCCGCUACU-GUGCGcGGCAugGAa -3'
miRNA:   3'- uugGGCGAUGAcCACGC-CCGUugCUg -5'
26693 3' -58.3 NC_005808.1 + 20086 0.71 0.215227
Target:  5'- uGCUCGCUGCgGGgaugaugGCGGGCA-UGACc -3'
miRNA:   3'- uUGGGCGAUGaCCa------CGCCCGUuGCUG- -5'
26693 3' -58.3 NC_005808.1 + 15129 0.71 0.22703
Target:  5'- aGGCCCGaccccaUGCUGGcgGCggaugcgcccaGGGCGACGGCu -3'
miRNA:   3'- -UUGGGCg-----AUGACCa-CG-----------CCCGUUGCUG- -5'
26693 3' -58.3 NC_005808.1 + 23176 0.7 0.25228
Target:  5'- cGGCCCcCUGCUGGUGCGacaGCAGCa-- -3'
miRNA:   3'- -UUGGGcGAUGACCACGCc--CGUUGcug -5'
26693 3' -58.3 NC_005808.1 + 39044 0.69 0.279796
Target:  5'- cAGCCCGCUGCUGcGcUGUucgGcGGCAGCuGGCa -3'
miRNA:   3'- -UUGGGCGAUGAC-C-ACG---C-CCGUUG-CUG- -5'
26693 3' -58.3 NC_005808.1 + 8553 0.69 0.287038
Target:  5'- cAGCCgCGCcgAUg---GCGGGCAGCGACa -3'
miRNA:   3'- -UUGG-GCGa-UGaccaCGCCCGUUGCUG- -5'
26693 3' -58.3 NC_005808.1 + 31086 0.69 0.294426
Target:  5'- gGugCCGCUGCUcaccucGGUGCaGGcCGGCGAg -3'
miRNA:   3'- -UugGGCGAUGA------CCACGcCC-GUUGCUg -5'
26693 3' -58.3 NC_005808.1 + 35186 0.68 0.324652
Target:  5'- cGCCCGCUGCUcuauacccuguccGGUcuguauuCGGGCGucaACGACg -3'
miRNA:   3'- uUGGGCGAUGA-------------CCAc------GCCCGU---UGCUG- -5'
26693 3' -58.3 NC_005808.1 + 32461 0.68 0.325457
Target:  5'- cGCCCcCUACUgccgaGGUGgGGGCGGcCGAUg -3'
miRNA:   3'- uUGGGcGAUGA-----CCACgCCCGUU-GCUG- -5'
26693 3' -58.3 NC_005808.1 + 15049 0.68 0.325457
Target:  5'- uGCCCGCgu-UGaUGCGGGCAAuguuCGACu -3'
miRNA:   3'- uUGGGCGaugACcACGCCCGUU----GCUG- -5'
26693 3' -58.3 NC_005808.1 + 6340 0.68 0.333585
Target:  5'- gAACUCGCc-CUGGUGCgucuGGGUGGCGAa -3'
miRNA:   3'- -UUGGGCGauGACCACG----CCCGUUGCUg -5'
26693 3' -58.3 NC_005808.1 + 36045 0.68 0.34186
Target:  5'- gGAUgCGCUGacgcCUGGcgauuCGGGCGACGACg -3'
miRNA:   3'- -UUGgGCGAU----GACCac---GCCCGUUGCUG- -5'
26693 3' -58.3 NC_005808.1 + 41597 0.67 0.367568
Target:  5'- -uCCCgGCcAgUGGcGCGGGCAGCGGg -3'
miRNA:   3'- uuGGG-CGaUgACCaCGCCCGUUGCUg -5'
26693 3' -58.3 NC_005808.1 + 4354 0.67 0.376428
Target:  5'- uGGCCguugCGUUGCcGGUGCGcgugaaGGCGACGGCc -3'
miRNA:   3'- -UUGG----GCGAUGaCCACGC------CCGUUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.