miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26694 5' -62.4 NC_005808.1 + 5146 0.66 0.29349
Target:  5'- uGCCgcgcagGCGGCcGUCGCUgcucacgcccuUGGCGAGGGu -3'
miRNA:   3'- cUGGa-----CGCUG-CGGCGG-----------ACCGCUCCUu -5'
26694 5' -62.4 NC_005808.1 + 12012 0.66 0.29349
Target:  5'- cGGCCaGCaGCGCgGCCguggccGGCGAGGu- -3'
miRNA:   3'- -CUGGaCGcUGCGgCGGa-----CCGCUCCuu -5'
26694 5' -62.4 NC_005808.1 + 27779 0.66 0.286321
Target:  5'- cGACCUGgGcgaaggcaGCGCCGCCgaGGUGcAGGu- -3'
miRNA:   3'- -CUGGACgC--------UGCGGCGGa-CCGC-UCCuu -5'
26694 5' -62.4 NC_005808.1 + 16860 0.66 0.279291
Target:  5'- cGCCcaGCGugcUGCCGCC-GGUGAGGAc -3'
miRNA:   3'- cUGGa-CGCu--GCGGCGGaCCGCUCCUu -5'
26694 5' -62.4 NC_005808.1 + 4785 0.66 0.27929
Target:  5'- cACaCUGCGcccagcACGCCGgCUGGCGcugcGGGAu -3'
miRNA:   3'- cUG-GACGC------UGCGGCgGACCGC----UCCUu -5'
26694 5' -62.4 NC_005808.1 + 19499 0.66 0.272399
Target:  5'- cGCCgUG-GGCGCCGCCguUGGCGucGGGGc -3'
miRNA:   3'- cUGG-ACgCUGCGGCGG--ACCGC--UCCUu -5'
26694 5' -62.4 NC_005808.1 + 9315 0.67 0.216412
Target:  5'- cGACCUgGCGGCGCaCGUCggcgcGGCGGGcGGc -3'
miRNA:   3'- -CUGGA-CGCUGCG-GCGGa----CCGCUC-CUu -5'
26694 5' -62.4 NC_005808.1 + 14402 0.67 0.216412
Target:  5'- cGACCUGgacaaGGCGCCGCaccugcugGGCGuGGGc -3'
miRNA:   3'- -CUGGACg----CUGCGGCGga------CCGCuCCUu -5'
26694 5' -62.4 NC_005808.1 + 15359 0.68 0.210839
Target:  5'- aGCCUGgGGCGCCGgCUGGacaGcaaAGGAu -3'
miRNA:   3'- cUGGACgCUGCGGCgGACCg--C---UCCUu -5'
26694 5' -62.4 NC_005808.1 + 23518 0.68 0.205391
Target:  5'- cGGCCUGCaauCGCgUGaCCUcGGCGAGGAc -3'
miRNA:   3'- -CUGGACGcu-GCG-GC-GGA-CCGCUCCUu -5'
26694 5' -62.4 NC_005808.1 + 20546 0.68 0.189771
Target:  5'- cGACCcgagcaagcGCGACGaCCGCaacaUGGCGuGGAAg -3'
miRNA:   3'- -CUGGa--------CGCUGC-GGCGg---ACCGCuCCUU- -5'
26694 5' -62.4 NC_005808.1 + 13133 0.68 0.189771
Target:  5'- uGGCCgcGCGcuuCGUCGCCUGGUGccAGGAGc -3'
miRNA:   3'- -CUGGa-CGCu--GCGGCGGACCGC--UCCUU- -5'
26694 5' -62.4 NC_005808.1 + 38099 0.68 0.184801
Target:  5'- cGCCUGUGGCGCCGCgCgcauccGGCGGuuucgucguucuGGAAg -3'
miRNA:   3'- cUGGACGCUGCGGCG-Ga-----CCGCU------------CCUU- -5'
26694 5' -62.4 NC_005808.1 + 19070 0.68 0.184801
Target:  5'- cGACC-GCGuGCGCCGCCUGGa-AGGc- -3'
miRNA:   3'- -CUGGaCGC-UGCGGCGGACCgcUCCuu -5'
26694 5' -62.4 NC_005808.1 + 7556 0.68 0.184801
Target:  5'- cGAUCUGCGGCGCCaCC-GGCuuGGAc -3'
miRNA:   3'- -CUGGACGCUGCGGcGGaCCGcuCCUu -5'
26694 5' -62.4 NC_005808.1 + 15166 0.69 0.179946
Target:  5'- gGGCCUGCG--GCCGCCgGGCGcGGu- -3'
miRNA:   3'- -CUGGACGCugCGGCGGaCCGCuCCuu -5'
26694 5' -62.4 NC_005808.1 + 38734 0.69 0.157337
Target:  5'- cGGCCUacaGCGACGgCGCCUGGUacaacuucgccGAGGu- -3'
miRNA:   3'- -CUGGA---CGCUGCgGCGGACCG-----------CUCCuu -5'
26694 5' -62.4 NC_005808.1 + 8471 0.69 0.157337
Target:  5'- uGGCCUGCGAUGCCGCagccgacGCGAGu-- -3'
miRNA:   3'- -CUGGACGCUGCGGCGgac----CGCUCcuu -5'
26694 5' -62.4 NC_005808.1 + 33598 0.7 0.149034
Target:  5'- cGCCUGCuggaaGCGCCcCCgcgcGGCGAGGAAa -3'
miRNA:   3'- cUGGACGc----UGCGGcGGa---CCGCUCCUU- -5'
26694 5' -62.4 NC_005808.1 + 42451 0.7 0.147824
Target:  5'- cGCCUGCGGgGaaGCCUGGCGccacgccguagcuuGGGAc -3'
miRNA:   3'- cUGGACGCUgCggCGGACCGC--------------UCCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.