miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26695 3' -51.8 NC_005808.1 + 8899 0.69 0.701271
Target:  5'- uGUGAAugGCGCU-AUCGGCGgcGCGCu -3'
miRNA:   3'- -CGUUUugCGCGAgUGGCUGCacUGCG- -5'
26695 3' -51.8 NC_005808.1 + 36512 0.7 0.65629
Target:  5'- cGCAAGGcCGCGCUCGaCGACuucGAgGCg -3'
miRNA:   3'- -CGUUUU-GCGCGAGUgGCUGca-CUgCG- -5'
26695 3' -51.8 NC_005808.1 + 31038 0.69 0.6676
Target:  5'- gGCAAu-CGCGCggGCCaACGUG-CGCg -3'
miRNA:   3'- -CGUUuuGCGCGagUGGcUGCACuGCG- -5'
26695 3' -51.8 NC_005808.1 + 25088 0.69 0.678875
Target:  5'- aGCGcAGCGCGCccggCGCCGugG-GAUacaGCg -3'
miRNA:   3'- -CGUuUUGCGCGa---GUGGCugCaCUG---CG- -5'
26695 3' -51.8 NC_005808.1 + 10662 0.69 0.678875
Target:  5'- cGUGAAACGCGC-CGCCGuguccaguuGCGUcuuGACGg -3'
miRNA:   3'- -CGUUUUGCGCGaGUGGC---------UGCA---CUGCg -5'
26695 3' -51.8 NC_005808.1 + 3823 0.69 0.690102
Target:  5'- gGCAG---GCGCUUGCCGugGUGAg-- -3'
miRNA:   3'- -CGUUuugCGCGAGUGGCugCACUgcg -5'
26695 3' -51.8 NC_005808.1 + 34561 0.69 0.690102
Target:  5'- aGCGguuGAGCGUcgagGCugUCACCGGCGaagcUGGCGCc -3'
miRNA:   3'- -CGU---UUUGCG----CG--AGUGGCUGC----ACUGCG- -5'
26695 3' -51.8 NC_005808.1 + 7141 0.69 0.697927
Target:  5'- uGCAuAAGgGCGCUCAU-GACGUugaagcccaggcccGACGCg -3'
miRNA:   3'- -CGU-UUUgCGCGAGUGgCUGCA--------------CUGCG- -5'
26695 3' -51.8 NC_005808.1 + 2008 0.69 0.701271
Target:  5'- -uGAGGCccagGCGCUCGCUGGCGaagucGCGCa -3'
miRNA:   3'- cgUUUUG----CGCGAGUGGCUGCac---UGCG- -5'
26695 3' -51.8 NC_005808.1 + 16171 0.7 0.65629
Target:  5'- gGCGuuAcCGCGUcggaguUCACCGACGccACGCg -3'
miRNA:   3'- -CGUuuU-GCGCG------AGUGGCUGCacUGCG- -5'
26695 3' -51.8 NC_005808.1 + 32546 0.7 0.644956
Target:  5'- cCAGGAUGCuGC-CGCCGGCGaUGcCGCu -3'
miRNA:   3'- cGUUUUGCG-CGaGUGGCUGC-ACuGCG- -5'
26695 3' -51.8 NC_005808.1 + 23829 0.7 0.644956
Target:  5'- -uGAAGUGCGg-CACCGGCGUGACcaGCa -3'
miRNA:   3'- cgUUUUGCGCgaGUGGCUGCACUG--CG- -5'
26695 3' -51.8 NC_005808.1 + 23449 0.73 0.437984
Target:  5'- uGCGGAugguuCGCGCguacaCGCCGGCGUGgaacagguGCGCc -3'
miRNA:   3'- -CGUUUu----GCGCGa----GUGGCUGCAC--------UGCG- -5'
26695 3' -51.8 NC_005808.1 + 11424 0.73 0.478948
Target:  5'- gGCGAGccgGCGUGCaggUCGCCGAUaaGGCGCg -3'
miRNA:   3'- -CGUUU---UGCGCG---AGUGGCUGcaCUGCG- -5'
26695 3' -51.8 NC_005808.1 + 32692 0.72 0.510867
Target:  5'- aGCAGuucgccGACGUGCUCGCCGcgugcaaucagGCGauggagggcUGACGCc -3'
miRNA:   3'- -CGUU------UUGCGCGAGUGGC-----------UGC---------ACUGCG- -5'
26695 3' -51.8 NC_005808.1 + 13928 0.72 0.510867
Target:  5'- gGCGAuguCGCGCagCGCCGugGacugGAUGCc -3'
miRNA:   3'- -CGUUuu-GCGCGa-GUGGCugCa---CUGCG- -5'
26695 3' -51.8 NC_005808.1 + 39697 0.71 0.553604
Target:  5'- gGCAAGAcgguuucCGCGCUCACCG-CGcugGACa- -3'
miRNA:   3'- -CGUUUU-------GCGCGAGUGGCuGCa--CUGcg -5'
26695 3' -51.8 NC_005808.1 + 40020 0.71 0.554716
Target:  5'- gGCGgcAAGCGCGCgcacgCGCUGGgcCGUGuCGCa -3'
miRNA:   3'- -CGU--UUUGCGCGa----GUGGCU--GCACuGCG- -5'
26695 3' -51.8 NC_005808.1 + 34423 0.71 0.562511
Target:  5'- gGCAGGACgccaGCGCcuuccugggccgcaUCAUCGACGUGAacgGCa -3'
miRNA:   3'- -CGUUUUG----CGCG--------------AGUGGCUGCACUg--CG- -5'
26695 3' -51.8 NC_005808.1 + 2343 0.71 0.575941
Target:  5'- uGCGugGCGCGCgugCGCCGcaauucggccugcACGUGGCa- -3'
miRNA:   3'- -CGUuuUGCGCGa--GUGGC-------------UGCACUGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.