miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26696 3' -52.1 NC_005808.1 + 31369 0.67 0.723525
Target:  5'- ---cGCuaguGGGCGUgGGCggGAACGUGg -3'
miRNA:   3'- uuuaCGu---CCCGCAaCUGgaCUUGCAC- -5'
26696 3' -52.1 NC_005808.1 + 41173 0.67 0.712219
Target:  5'- --uUGCcaucuuGGGCGUgGAUgUGGACGUGc -3'
miRNA:   3'- uuuACGu-----CCCGCAaCUGgACUUGCAC- -5'
26696 3' -52.1 NC_005808.1 + 38928 0.67 0.693951
Target:  5'- ---aGUGGGGCGUUGugcaggcguccgguuGCUugUGGACGUGg -3'
miRNA:   3'- uuuaCGUCCCGCAAC---------------UGG--ACUUGCAC- -5'
26696 3' -52.1 NC_005808.1 + 13471 0.68 0.666245
Target:  5'- cGGUGUcGGGCa-UGACCUGGGCGa- -3'
miRNA:   3'- uUUACGuCCCGcaACUGGACUUGCac -5'
26696 3' -52.1 NC_005808.1 + 36715 0.71 0.462337
Target:  5'- ---cGguGGGCGUUGAUCgacgaGAACGUc -3'
miRNA:   3'- uuuaCguCCCGCAACUGGa----CUUGCAc -5'
26696 3' -52.1 NC_005808.1 + 27026 0.73 0.376602
Target:  5'- ---cGCAGcgcgucgucacugacGGCGccaUUGACCUGGACGUGg -3'
miRNA:   3'- uuuaCGUC---------------CCGC---AACUGGACUUGCAC- -5'
26696 3' -52.1 NC_005808.1 + 19825 0.73 0.36735
Target:  5'- ---cGCAGGGCGUUGACCaaucggcccucacccUGGGCa-- -3'
miRNA:   3'- uuuaCGUCCCGCAACUGG---------------ACUUGcac -5'
26696 3' -52.1 NC_005808.1 + 21170 1.07 0.001609
Target:  5'- gAAAUGCAGGGCGUUGACCUGAACGUGg -3'
miRNA:   3'- -UUUACGUCCCGCAACUGGACUUGCAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.