miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26697 3' -54.5 NC_005808.1 + 32933 0.66 0.705053
Target:  5'- gCGGcUGUUCgGCCAGGGcgACCAcGGcuGCGUCg -3'
miRNA:   3'- -GCC-ACAGG-CGGUUCU--UGGU-CC--UGUAG- -5'
26697 3' -54.5 NC_005808.1 + 15337 0.66 0.693972
Target:  5'- gCGGUucauugccUCgGCCAAGAGCCuGGGGCGc- -3'
miRNA:   3'- -GCCAc-------AGgCGGUUCUUGG-UCCUGUag -5'
26697 3' -54.5 NC_005808.1 + 28600 0.66 0.682828
Target:  5'- uGGUGUCgGUCAGuuccuuGAACCGGGcGCGg- -3'
miRNA:   3'- gCCACAGgCGGUU------CUUGGUCC-UGUag -5'
26697 3' -54.5 NC_005808.1 + 2800 0.66 0.671632
Target:  5'- -cGUGUUCGCC--GAAgCAGGACAg- -3'
miRNA:   3'- gcCACAGGCGGuuCUUgGUCCUGUag -5'
26697 3' -54.5 NC_005808.1 + 14360 0.66 0.660398
Target:  5'- gCGGUGUCCu---GGAagGCgGGGGCAUCc -3'
miRNA:   3'- -GCCACAGGcgguUCU--UGgUCCUGUAG- -5'
26697 3' -54.5 NC_005808.1 + 34078 0.67 0.626575
Target:  5'- uGGgcaaGUUCGCCGGcGACaucaAGGGCAUCg -3'
miRNA:   3'- gCCa---CAGGCGGUUcUUGg---UCCUGUAG- -5'
26697 3' -54.5 NC_005808.1 + 35330 0.67 0.604033
Target:  5'- -----aCCGCCGAGAagcugcacaagGCCGGcGACAUCg -3'
miRNA:   3'- gccacaGGCGGUUCU-----------UGGUC-CUGUAG- -5'
26697 3' -54.5 NC_005808.1 + 5600 0.67 0.592795
Target:  5'- uCGaUGUCCGCCucguuGGuAGCCAcGGCGUCg -3'
miRNA:   3'- -GCcACAGGCGGu----UC-UUGGUcCUGUAG- -5'
26697 3' -54.5 NC_005808.1 + 3426 0.68 0.581593
Target:  5'- uCGGcc-CCGCUAcucaAGAAUCAGGugGUCa -3'
miRNA:   3'- -GCCacaGGCGGU----UCUUGGUCCugUAG- -5'
26697 3' -54.5 NC_005808.1 + 27791 0.68 0.548284
Target:  5'- aGGcagcgCCGCCGAGGugCAGGuuuccagcgACAUCg -3'
miRNA:   3'- gCCaca--GGCGGUUCUugGUCC---------UGUAG- -5'
26697 3' -54.5 NC_005808.1 + 8717 0.7 0.46301
Target:  5'- uCGGaUGUCgCGCaccuuGAGCCGGGACAc- -3'
miRNA:   3'- -GCC-ACAG-GCGguu--CUUGGUCCUGUag -5'
26697 3' -54.5 NC_005808.1 + 41167 0.7 0.46301
Target:  5'- aGGUGUuuGCCAucuuGGGCguGGAUGUg -3'
miRNA:   3'- gCCACAggCGGUu---CUUGguCCUGUAg -5'
26697 3' -54.5 NC_005808.1 + 36245 0.7 0.452829
Target:  5'- uGGgccgGUUCGCCAcccAGAcgcACCAGGGCGa- -3'
miRNA:   3'- gCCa---CAGGCGGU---UCU---UGGUCCUGUag -5'
26697 3' -54.5 NC_005808.1 + 33875 0.7 0.452829
Target:  5'- uGGUGUCCcgGCuCAAGGugCGcGACAUCc -3'
miRNA:   3'- gCCACAGG--CG-GUUCUugGUcCUGUAG- -5'
26697 3' -54.5 NC_005808.1 + 23393 0.7 0.442771
Target:  5'- --cUGUCCGCgGAGAacgGCCAGaACAUCa -3'
miRNA:   3'- gccACAGGCGgUUCU---UGGUCcUGUAG- -5'
26697 3' -54.5 NC_005808.1 + 18072 0.71 0.385213
Target:  5'- gGGUGcgugcugggCCGCCGAagccggcgcGAACCAGGACGccuUCg -3'
miRNA:   3'- gCCACa--------GGCGGUU---------CUUGGUCCUGU---AG- -5'
26697 3' -54.5 NC_005808.1 + 20805 1.11 0.000645
Target:  5'- cCGGUGUCCGCCAAGAACCAGGACAUCa -3'
miRNA:   3'- -GCCACAGGCGGUUCUUGGUCCUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.