miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26698 5' -57.3 NC_005808.1 + 28222 0.66 0.539123
Target:  5'- aCGUUCCGCgGCGCgGaUGCCCcCGc-- -3'
miRNA:   3'- aGCAAGGCG-CGUGaC-ACGGGcGCaac -5'
26698 5' -57.3 NC_005808.1 + 21379 0.66 0.539123
Target:  5'- uUCGUcgCaaugGCGCGCUGgGCCUGCGc-- -3'
miRNA:   3'- -AGCAa-Gg---CGCGUGACaCGGGCGCaac -5'
26698 5' -57.3 NC_005808.1 + 11171 0.66 0.528433
Target:  5'- aCGUUgCGUGCGCUGgucGgCCGUGgUGa -3'
miRNA:   3'- aGCAAgGCGCGUGACa--CgGGCGCaAC- -5'
26698 5' -57.3 NC_005808.1 + 39380 0.66 0.507298
Target:  5'- aCGgUCCGCGacaauauGCUGcguguugaaaaUGCCCGCGUg- -3'
miRNA:   3'- aGCaAGGCGCg------UGAC-----------ACGGGCGCAac -5'
26698 5' -57.3 NC_005808.1 + 22536 0.67 0.496865
Target:  5'- aCGcgCagCGCGCGC-GUGCCgGUGUUGu -3'
miRNA:   3'- aGCaaG--GCGCGUGaCACGGgCGCAAC- -5'
26698 5' -57.3 NC_005808.1 + 31187 0.67 0.466173
Target:  5'- aCGggCCGCGCACguucUGCCUGaCGg-- -3'
miRNA:   3'- aGCaaGGCGCGUGac--ACGGGC-GCaac -5'
26698 5' -57.3 NC_005808.1 + 23893 0.67 0.444302
Target:  5'- cCGUaCCGaUGCGCUGcugcugaccgagGCCCGCGUg- -3'
miRNA:   3'- aGCAaGGC-GCGUGACa-----------CGGGCGCAac -5'
26698 5' -57.3 NC_005808.1 + 35970 0.68 0.436493
Target:  5'- aCGUgUCCGCGCGCaGcGCCaCGCGc-- -3'
miRNA:   3'- aGCA-AGGCGCGUGaCaCGG-GCGCaac -5'
26698 5' -57.3 NC_005808.1 + 30987 0.68 0.426843
Target:  5'- aUGcUUCCGCugGCACUGcUGCCCgGCGg-- -3'
miRNA:   3'- aGC-AAGGCG--CGUGAC-ACGGG-CGCaac -5'
26698 5' -57.3 NC_005808.1 + 11549 0.7 0.329636
Target:  5'- uUCGggccUUCGCGCACguugGCCCGCGc-- -3'
miRNA:   3'- -AGCa---AGGCGCGUGaca-CGGGCGCaac -5'
26698 5' -57.3 NC_005808.1 + 37922 0.7 0.306122
Target:  5'- cCGgcuaUCCgGCGCGCUgGUGCCCGCc--- -3'
miRNA:   3'- aGCa---AGG-CGCGUGA-CACGGGCGcaac -5'
26698 5' -57.3 NC_005808.1 + 15024 0.7 0.306122
Target:  5'- aUGgugUCCGCGUugguguugGCgaUGCCCGCGUUGa -3'
miRNA:   3'- aGCa--AGGCGCG--------UGacACGGGCGCAAC- -5'
26698 5' -57.3 NC_005808.1 + 27817 0.71 0.291172
Target:  5'- aCGUcCuCGCGCGCgcUGCCCGCGgUGg -3'
miRNA:   3'- aGCAaG-GCGCGUGacACGGGCGCaAC- -5'
26698 5' -57.3 NC_005808.1 + 28644 0.72 0.217919
Target:  5'- -aGUUCCGCGCGCagugccagaucgGUGCCgGCGg-- -3'
miRNA:   3'- agCAAGGCGCGUGa-----------CACGGgCGCaac -5'
26698 5' -57.3 NC_005808.1 + 33742 0.74 0.171483
Target:  5'- uUCGUggcgaCCGaggccaaCGCGCUG-GCCCGCGUUGc -3'
miRNA:   3'- -AGCAa----GGC-------GCGUGACaCGGGCGCAAC- -5'
26698 5' -57.3 NC_005808.1 + 20645 1.09 0.000436
Target:  5'- gUCGUUCCGCGCACUGUGCCCGCGUUGg -3'
miRNA:   3'- -AGCAAGGCGCGUGACACGGGCGCAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.