miRNA display CGI


Results 81 - 94 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26699 5' -59.5 NC_005808.1 + 13138 0.72 0.189742
Target:  5'- gCGCGcuucgucgccugguGCCagGAGCAccugGGCGCGACGugCGa -3'
miRNA:   3'- -GCGC--------------UGGg-CUCGU----UCGCGCUGCugGC- -5'
26699 5' -59.5 NC_005808.1 + 15171 0.71 0.221248
Target:  5'- uGCGGCcgCCGGGCGcggugcgccaggcGCGCGACGACUa -3'
miRNA:   3'- gCGCUG--GGCUCGUu------------CGCGCUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 14767 0.68 0.324609
Target:  5'- gCGCGGCCggcgccaccgCGGGCAGcgcGCGCGAgGACg- -3'
miRNA:   3'- -GCGCUGG----------GCUCGUU---CGCGCUgCUGgc -5'
26699 5' -59.5 NC_005808.1 + 33780 0.68 0.322288
Target:  5'- gGCuGGCCCGAcccaGCAgaucgguacugaccGGCGCGGcCGACCc -3'
miRNA:   3'- gCG-CUGGGCU----CGU--------------UCGCGCU-GCUGGc -5'
26699 5' -59.5 NC_005808.1 + 14983 0.69 0.31692
Target:  5'- -cCGGCCCaucGuCAAGgGCGACGACCa -3'
miRNA:   3'- gcGCUGGGcu-C-GUUCgCGCUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 33402 0.69 0.309369
Target:  5'- cCGCGcCgCCGAGCAGGCcaacguCGACGGCg- -3'
miRNA:   3'- -GCGCuG-GGCUCGUUCGc-----GCUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 26600 0.69 0.301956
Target:  5'- gGCGACCUGucccuGC--GCGCGGCGcACCu -3'
miRNA:   3'- gCGCUGGGCu----CGuuCGCGCUGC-UGGc -5'
26699 5' -59.5 NC_005808.1 + 35359 0.69 0.287542
Target:  5'- gGCGGCCgacaucgccgaGGGUGAGCGCGGCGcagaugcuGCCGu -3'
miRNA:   3'- gCGCUGGg----------CUCGUUCGCGCUGC--------UGGC- -5'
26699 5' -59.5 NC_005808.1 + 14898 0.7 0.273675
Target:  5'- gGCGAgCCGcuGCcGGCGCG-CGGCCu -3'
miRNA:   3'- gCGCUgGGCu-CGuUCGCGCuGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 10259 0.7 0.273675
Target:  5'- aGCGACCUGGGCGGcgguuGuCGgGACG-CCGg -3'
miRNA:   3'- gCGCUGGGCUCGUU-----C-GCgCUGCuGGC- -5'
26699 5' -59.5 NC_005808.1 + 37063 0.7 0.253887
Target:  5'- gGCGACCUGGGCGGaaccUG-GGCGGCCGg -3'
miRNA:   3'- gCGCUGGGCUCGUUc---GCgCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 26297 0.7 0.247558
Target:  5'- uCGCuuCCCGuGC--GCGaCGACGACCGg -3'
miRNA:   3'- -GCGcuGGGCuCGuuCGC-GCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 27331 0.71 0.22935
Target:  5'- gGCGACagCGGGCAAcuguuuGUGCGGCaGGCCGa -3'
miRNA:   3'- gCGCUGg-GCUCGUU------CGCGCUG-CUGGC- -5'
26699 5' -59.5 NC_005808.1 + 20543 1.08 0.000416
Target:  5'- cCGCGACCCGAGCAAGCGCGACGACCGc -3'
miRNA:   3'- -GCGCUGGGCUCGUUCGCGCUGCUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.