miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
267 3' -61.9 AC_000008.1 + 4319 0.66 0.246552
Target:  5'- uUCAGUAGCaAGCUgauugccagggGCaGGCCCUUGgUg -3'
miRNA:   3'- -AGUCGUCG-UCGG-----------CGcCCGGGAACgAa -5'
267 3' -61.9 AC_000008.1 + 16407 0.66 0.233881
Target:  5'- cUCGGuUAGCGGCCuGCGcGuGCCCgUGCg- -3'
miRNA:   3'- -AGUC-GUCGUCGG-CGC-C-CGGGaACGaa -5'
267 3' -61.9 AC_000008.1 + 9396 0.66 0.221761
Target:  5'- aCGGCGGCGGCUGCuuggacuuaccGGCCCUgGUUc -3'
miRNA:   3'- aGUCGUCGUCGGCGc----------CCGGGAaCGAa -5'
267 3' -61.9 AC_000008.1 + 13813 0.66 0.22117
Target:  5'- gCAGCagaauaguccacaGGCGGCCGaguuGGGCCCcUGUa- -3'
miRNA:   3'- aGUCG-------------UCGUCGGCg---CCCGGGaACGaa -5'
267 3' -61.9 AC_000008.1 + 16253 0.67 0.204588
Target:  5'- cCGGCcgacgGGCGGCCauGCGGGCCgCUcgaagGCUg -3'
miRNA:   3'- aGUCG-----UCGUCGG--CGCCCGG-GAa----CGAa -5'
267 3' -61.9 AC_000008.1 + 23185 0.68 0.170832
Target:  5'- gCAGCGgugcagccacaacgcGCAGcCCGUGGGCUCgugaUGCUUg -3'
miRNA:   3'- aGUCGU---------------CGUC-GGCGCCCGGGa---ACGAA- -5'
267 3' -61.9 AC_000008.1 + 24139 0.68 0.168955
Target:  5'- gCAGcCAGCGGCCcuCGGGCUCUacuaUGUUUa -3'
miRNA:   3'- aGUC-GUCGUCGGc-GCCCGGGA----ACGAA- -5'
267 3' -61.9 AC_000008.1 + 16341 0.72 0.082991
Target:  5'- --cGCAGCAGCCGCGG-CCauuagUGCUa -3'
miRNA:   3'- aguCGUCGUCGGCGCCcGGga---ACGAa -5'
267 3' -61.9 AC_000008.1 + 12440 0.77 0.03039
Target:  5'- cCGGCAGCAGCCGCaGGCCaaccgGCUc -3'
miRNA:   3'- aGUCGUCGUCGGCGcCCGGgaa--CGAa -5'
267 3' -61.9 AC_000008.1 + 26136 1.05 0.000177
Target:  5'- aUCAGCAGCAGCCGCGGGCCCUUGCUUc -3'
miRNA:   3'- -AGUCGUCGUCGGCGCCCGGGAACGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.