miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26700 5' -57.3 NC_005808.1 + 8105 0.66 0.540301
Target:  5'- gCGUUUGaggcccugcaccGCGCGGCCGGC-GUugGUUGUGg -3'
miRNA:   3'- -GCAAGC------------CGUGCCGGUCGuCG--UAGCAC- -5'
26700 5' -57.3 NC_005808.1 + 33810 0.66 0.540301
Target:  5'- ---cCGGCGCGGCCGaCc-CAUCGUGc -3'
miRNA:   3'- gcaaGCCGUGCCGGUcGucGUAGCAC- -5'
26700 5' -57.3 NC_005808.1 + 9224 0.66 0.529565
Target:  5'- aCGUUcugCGGCGCGcCCGGCGGCAg---- -3'
miRNA:   3'- -GCAA---GCCGUGCcGGUCGUCGUagcac -5'
26700 5' -57.3 NC_005808.1 + 32938 0.66 0.518908
Target:  5'- uGUUCGGcCAgGGCgaccaCGGCuGCGUCGa- -3'
miRNA:   3'- gCAAGCC-GUgCCG-----GUCGuCGUAGCac -5'
26700 5' -57.3 NC_005808.1 + 21458 0.66 0.518908
Target:  5'- gGcgCGGacacgGCGGCCaagcugGGCAGCGUCGa- -3'
miRNA:   3'- gCaaGCCg----UGCCGG------UCGUCGUAGCac -5'
26700 5' -57.3 NC_005808.1 + 13299 0.66 0.518908
Target:  5'- aGUgcUgGGCAagGGCCAGCAGUucGUCGc- -3'
miRNA:   3'- gCA--AgCCGUg-CCGGUCGUCG--UAGCac -5'
26700 5' -57.3 NC_005808.1 + 39849 0.66 0.508337
Target:  5'- aGUggUCGGCACGcCCgAGCAGCGcCGg- -3'
miRNA:   3'- gCA--AGCCGUGCcGG-UCGUCGUaGCac -5'
26700 5' -57.3 NC_005808.1 + 29478 0.66 0.497858
Target:  5'- ----aGcGCGCGGCCAGUuccGCGUCGg- -3'
miRNA:   3'- gcaagC-CGUGCCGGUCGu--CGUAGCac -5'
26700 5' -57.3 NC_005808.1 + 28280 0.66 0.497858
Target:  5'- aGUUCagccaaGGCGCGcGCCAGUucAGCAacgaCGUGg -3'
miRNA:   3'- gCAAG------CCGUGC-CGGUCG--UCGUa---GCAC- -5'
26700 5' -57.3 NC_005808.1 + 38251 0.66 0.497858
Target:  5'- ---cCGGCaacgcaACGGCCAGCAucaaggcugGCAccaUCGUGg -3'
miRNA:   3'- gcaaGCCG------UGCCGGUCGU---------CGU---AGCAC- -5'
26700 5' -57.3 NC_005808.1 + 28572 0.66 0.496816
Target:  5'- ---gCGGCGCgcacgucGGCCaccGGCAGCGUgGUGu -3'
miRNA:   3'- gcaaGCCGUG-------CCGG---UCGUCGUAgCAC- -5'
26700 5' -57.3 NC_005808.1 + 12459 0.67 0.487477
Target:  5'- cCGacgCGGUGCaGGCCGGCGGCGUg--- -3'
miRNA:   3'- -GCaa-GCCGUG-CCGGUCGUCGUAgcac -5'
26700 5' -57.3 NC_005808.1 + 1751 0.67 0.4772
Target:  5'- cCGggCGGuCAUGGCCGGCcugcgccuggcGCGUCGg- -3'
miRNA:   3'- -GCaaGCC-GUGCCGGUCGu----------CGUAGCac -5'
26700 5' -57.3 NC_005808.1 + 5111 0.67 0.4772
Target:  5'- gCGUcCGGUGCGGCUGGCGccguugaacuGCAaCGUGc -3'
miRNA:   3'- -GCAaGCCGUGCCGGUCGU----------CGUaGCAC- -5'
26700 5' -57.3 NC_005808.1 + 10045 0.67 0.46703
Target:  5'- uCGgagCGGCAUcGCCggcGGCAGCAUCcUGg -3'
miRNA:   3'- -GCaa-GCCGUGcCGG---UCGUCGUAGcAC- -5'
26700 5' -57.3 NC_005808.1 + 15260 0.67 0.464001
Target:  5'- --gUCGGCcCGGCCuacguggaaAGCaacgcgcgccugugGGCGUCGUGg -3'
miRNA:   3'- gcaAGCCGuGCCGG---------UCG--------------UCGUAGCAC- -5'
26700 5' -57.3 NC_005808.1 + 20016 0.67 0.450996
Target:  5'- --cUCGGCAUGGCgcgccugcaucacaGGCAGCAUCuUGu -3'
miRNA:   3'- gcaAGCCGUGCCGg-------------UCGUCGUAGcAC- -5'
26700 5' -57.3 NC_005808.1 + 14038 0.67 0.447034
Target:  5'- aCGUgCGcGCcgcgAUGGCCGGCGGCcgcaagGUCGUGc -3'
miRNA:   3'- -GCAaGC-CG----UGCCGGUCGUCG------UAGCAC- -5'
26700 5' -57.3 NC_005808.1 + 28080 0.67 0.447034
Target:  5'- ----gGGCAggUGGCC-GCGGCGUCGUa -3'
miRNA:   3'- gcaagCCGU--GCCGGuCGUCGUAGCAc -5'
26700 5' -57.3 NC_005808.1 + 5258 0.67 0.444076
Target:  5'- gCGUU-GGCAcCGGCCAccguguugauguucGCGGCGUUGUc -3'
miRNA:   3'- -GCAAgCCGU-GCCGGU--------------CGUCGUAGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.