miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26701 3' -53 NC_005808.1 + 218 0.69 0.557279
Target:  5'- -gGCGAACUgGCgcaccucgGCauuggCGCGCUGGGu -3'
miRNA:   3'- cgCGUUUGA-CGa-------CGaaa--GCGCGACCC- -5'
26701 3' -53 NC_005808.1 + 2282 0.68 0.648228
Target:  5'- cGCGUAcAgUGCcGCgcggUCGaUGCUGGGg -3'
miRNA:   3'- -CGCGUuUgACGaCGaa--AGC-GCGACCC- -5'
26701 3' -53 NC_005808.1 + 4382 0.66 0.759617
Target:  5'- uGCGCAGcCagGC-GCcgUCGCGCcGGGc -3'
miRNA:   3'- -CGCGUUuGa-CGaCGaaAGCGCGaCCC- -5'
26701 3' -53 NC_005808.1 + 5149 0.66 0.780615
Target:  5'- cGCGCAGGCggccgucGCUGCUcaCGCccuugGCgaGGGu -3'
miRNA:   3'- -CGCGUUUGa------CGACGAaaGCG-----CGa-CCC- -5'
26701 3' -53 NC_005808.1 + 6254 0.66 0.780615
Target:  5'- cCGguAACggUGCgGUUgaucugCGCGCUGGGc -3'
miRNA:   3'- cGCguUUG--ACGaCGAaa----GCGCGACCC- -5'
26701 3' -53 NC_005808.1 + 7001 0.67 0.671021
Target:  5'- cGCGCGAGCggGUcgGC--UCGCGUgaUGGGc -3'
miRNA:   3'- -CGCGUUUGa-CGa-CGaaAGCGCG--ACCC- -5'
26701 3' -53 NC_005808.1 + 7905 0.68 0.636801
Target:  5'- uGCGUAGAUcgccaGCUGCUcgUUGCGCUcGGc -3'
miRNA:   3'- -CGCGUUUGa----CGACGAa-AGCGCGAcCC- -5'
26701 3' -53 NC_005808.1 + 11262 0.67 0.716035
Target:  5'- aGgGUuuGC-GCUGCg---GCGCUGGGa -3'
miRNA:   3'- -CgCGuuUGaCGACGaaagCGCGACCC- -5'
26701 3' -53 NC_005808.1 + 12626 0.68 0.659638
Target:  5'- cGCGCucggcaucGCUGCUGCcguccUUUgGCGUcGGGu -3'
miRNA:   3'- -CGCGuu------UGACGACG-----AAAgCGCGaCCC- -5'
26701 3' -53 NC_005808.1 + 14427 0.66 0.770193
Target:  5'- gGCGCGc-CUGCgGCac-CGUGUUGGGc -3'
miRNA:   3'- -CGCGUuuGACGaCGaaaGCGCGACCC- -5'
26701 3' -53 NC_005808.1 + 14794 0.66 0.780615
Target:  5'- cGCGCGAggacguGCUGCgGCUgcgcggCGCGCg--- -3'
miRNA:   3'- -CGCGUU------UGACGaCGAaa----GCGCGaccc -5'
26701 3' -53 NC_005808.1 + 14895 0.66 0.759617
Target:  5'- gGCgGCGAGCcGCUGCcggCGCGC-GGc -3'
miRNA:   3'- -CG-CGUUUGaCGACGaaaGCGCGaCCc -5'
26701 3' -53 NC_005808.1 + 15126 0.66 0.759617
Target:  5'- uCGCGuGgUGCgUGCgcggCGCGCUGGc -3'
miRNA:   3'- cGCGUuUgACG-ACGaaa-GCGCGACCc -5'
26701 3' -53 NC_005808.1 + 18042 0.69 0.576422
Target:  5'- -gGCGGGCUGCUugggggccuuaccgGCgcggggugCGUGCUGGGc -3'
miRNA:   3'- cgCGUUUGACGA--------------CGaaa-----GCGCGACCC- -5'
26701 3' -53 NC_005808.1 + 18822 0.68 0.625371
Target:  5'- gGCGCAGGaaGCUGCgaauUUUGCGC-GGc -3'
miRNA:   3'- -CGCGUUUgaCGACGa---AAGCGCGaCCc -5'
26701 3' -53 NC_005808.1 + 19412 0.67 0.716035
Target:  5'- gGC-CGAcCUGCUGCUgUCGCaccaGCaGGGg -3'
miRNA:   3'- -CGcGUUuGACGACGAaAGCG----CGaCCC- -5'
26701 3' -53 NC_005808.1 + 19901 1.14 0.000516
Target:  5'- aGCGCAAACUGCUGCUUUCGCGCUGGGg -3'
miRNA:   3'- -CGCGUUUGACGACGAAAGCGCGACCC- -5'
26701 3' -53 NC_005808.1 + 19977 0.7 0.502203
Target:  5'- -aGCGAcuacCUGCUGCcg-CGCGCgGGGc -3'
miRNA:   3'- cgCGUUu---GACGACGaaaGCGCGaCCC- -5'
26701 3' -53 NC_005808.1 + 20071 0.7 0.546103
Target:  5'- cGCGCGcGCUGC-GCgugcUCGCuGCgGGGa -3'
miRNA:   3'- -CGCGUuUGACGaCGaa--AGCG-CGaCCC- -5'
26701 3' -53 NC_005808.1 + 20468 0.67 0.671021
Target:  5'- cGUGCAAAgcCUGUUcgaccGCgg-CGCGCUGGa -3'
miRNA:   3'- -CGCGUUU--GACGA-----CGaaaGCGCGACCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.