miRNA display CGI


Results 21 - 40 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26701 3' -53 NC_005808.1 + 31097 0.67 0.716035
Target:  5'- aGCGCAGGC-GCUGCccUUUGCGgUGu- -3'
miRNA:   3'- -CGCGUUUGaCGACGa-AAGCGCgACcc -5'
26701 3' -53 NC_005808.1 + 25783 0.67 0.716035
Target:  5'- cGCGUGAACUGC-GC---CGC-CUGGGc -3'
miRNA:   3'- -CGCGUUUGACGaCGaaaGCGcGACCC- -5'
26701 3' -53 NC_005808.1 + 14895 0.66 0.759617
Target:  5'- gGCgGCGAGCcGCUGCcggCGCGC-GGc -3'
miRNA:   3'- -CG-CGUUUGaCGACGaaaGCGCGaCCc -5'
26701 3' -53 NC_005808.1 + 4382 0.66 0.759617
Target:  5'- uGCGCAGcCagGC-GCcgUCGCGCcGGGc -3'
miRNA:   3'- -CGCGUUuGa-CGaCGaaAGCGCGaCCC- -5'
26701 3' -53 NC_005808.1 + 15126 0.66 0.759617
Target:  5'- uCGCGuGgUGCgUGCgcggCGCGCUGGc -3'
miRNA:   3'- cGCGUuUgACG-ACGaaa-GCGCGACCc -5'
26701 3' -53 NC_005808.1 + 20652 0.66 0.770193
Target:  5'- cGCGC--ACUG-UGCc--CGCGUUGGGc -3'
miRNA:   3'- -CGCGuuUGACgACGaaaGCGCGACCC- -5'
26701 3' -53 NC_005808.1 + 29201 0.66 0.770193
Target:  5'- cCGCAAcgaUGCcGCcuacaaccgCGCGCUGGGc -3'
miRNA:   3'- cGCGUUug-ACGaCGaaa------GCGCGACCC- -5'
26701 3' -53 NC_005808.1 + 5149 0.66 0.780615
Target:  5'- cGCGCAGGCggccgucGCUGCUcaCGCccuugGCgaGGGu -3'
miRNA:   3'- -CGCGUUUGa------CGACGAaaGCG-----CGa-CCC- -5'
26701 3' -53 NC_005808.1 + 14794 0.66 0.780615
Target:  5'- cGCGCGAggacguGCUGCgGCUgcgcggCGCGCg--- -3'
miRNA:   3'- -CGCGUU------UGACGaCGAaa----GCGCGaccc -5'
26701 3' -53 NC_005808.1 + 19412 0.67 0.716035
Target:  5'- gGC-CGAcCUGCUGCUgUCGCaccaGCaGGGg -3'
miRNA:   3'- -CGcGUUuGACGACGAaAGCG----CGaCCC- -5'
26701 3' -53 NC_005808.1 + 42199 0.67 0.704884
Target:  5'- cCGCcguGCUGCUGgUgggCGCcCUGGGc -3'
miRNA:   3'- cGCGuu-UGACGACgAaa-GCGcGACCC- -5'
26701 3' -53 NC_005808.1 + 32008 0.67 0.693656
Target:  5'- gGUGCAGGCUGCg-----CGC-CUGGGu -3'
miRNA:   3'- -CGCGUUUGACGacgaaaGCGcGACCC- -5'
26701 3' -53 NC_005808.1 + 35387 0.71 0.480833
Target:  5'- gGCGCAGA-UGCUGCcguggacaUCGCGCUGu- -3'
miRNA:   3'- -CGCGUUUgACGACGaa------AGCGCGACcc -5'
26701 3' -53 NC_005808.1 + 19977 0.7 0.502203
Target:  5'- -aGCGAcuacCUGCUGCcg-CGCGCgGGGc -3'
miRNA:   3'- cgCGUUu---GACGACGaaaGCGCGaCCC- -5'
26701 3' -53 NC_005808.1 + 28827 0.7 0.513043
Target:  5'- cGCGCAcaaGAUUGC-GCUcaugUCgGCGCUGGa -3'
miRNA:   3'- -CGCGU---UUGACGaCGAa---AG-CGCGACCc -5'
26701 3' -53 NC_005808.1 + 20071 0.7 0.546103
Target:  5'- cGCGCGcGCUGC-GCgugcUCGCuGCgGGGa -3'
miRNA:   3'- -CGCGUuUGACGaCGaa--AGCG-CGaCCC- -5'
26701 3' -53 NC_005808.1 + 32788 0.69 0.5584
Target:  5'- uGCGCAAAC-GCUGCUUgacugguucggcgugCGCGacCUGGc -3'
miRNA:   3'- -CGCGUUUGaCGACGAAa--------------GCGC--GACCc -5'
26701 3' -53 NC_005808.1 + 7905 0.68 0.636801
Target:  5'- uGCGUAGAUcgccaGCUGCUcgUUGCGCUcGGc -3'
miRNA:   3'- -CGCGUUUGa----CGACGAa-AGCGCGAcCC- -5'
26701 3' -53 NC_005808.1 + 20468 0.67 0.671021
Target:  5'- cGUGCAAAgcCUGUUcgaccGCgg-CGCGCUGGa -3'
miRNA:   3'- -CGCGUUU--GACGA-----CGaaaGCGCGACCc -5'
26701 3' -53 NC_005808.1 + 7001 0.67 0.671021
Target:  5'- cGCGCGAGCggGUcgGC--UCGCGUgaUGGGc -3'
miRNA:   3'- -CGCGUUUGa-CGa-CGaaAGCGCG--ACCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.