Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26701 | 5' | -54.3 | NC_005808.1 | + | 1893 | 0.68 | 0.565723 |
Target: 5'- gGCCGGGUggGCGAAcagcAGCgGGAUuuuuccugcguuccaGUCGCg -3' miRNA: 3'- gUGGCUCG--CGCUU----UCGaCCUA---------------CAGCG- -5' |
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26701 | 5' | -54.3 | NC_005808.1 | + | 6093 | 0.67 | 0.62852 |
Target: 5'- -gUCGAGCGCGGccuuGCgc-AUGUCGCa -3' miRNA: 3'- guGGCUCGCGCUuu--CGaccUACAGCG- -5' |
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26701 | 5' | -54.3 | NC_005808.1 | + | 6445 | 0.69 | 0.506799 |
Target: 5'- cCACCGccCGCGAAGGCgucGccGUCGCg -3' miRNA: 3'- -GUGGCucGCGCUUUCGac-CuaCAGCG- -5' |
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26701 | 5' | -54.3 | NC_005808.1 | + | 7245 | 0.67 | 0.651063 |
Target: 5'- cCACUG-GCGCG--GGCc-GAUGUCGCc -3' miRNA: 3'- -GUGGCuCGCGCuuUCGacCUACAGCG- -5' |
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26701 | 5' | -54.3 | NC_005808.1 | + | 12724 | 0.66 | 0.706901 |
Target: 5'- uCGCCcGGCcCGuugguGCUGGGUGcCGCg -3' miRNA: 3'- -GUGGcUCGcGCuuu--CGACCUACaGCG- -5' |
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26701 | 5' | -54.3 | NC_005808.1 | + | 12803 | 0.66 | 0.695839 |
Target: 5'- gCAUCGAGCGCGAGacAGCgu-AUGccgaaaucUCGCg -3' miRNA: 3'- -GUGGCUCGCGCUU--UCGaccUAC--------AGCG- -5' |
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26701 | 5' | -54.3 | NC_005808.1 | + | 13223 | 0.72 | 0.378731 |
Target: 5'- gCGCCGAGUcCGAGGGCUGGGgcaaggccaccggCGCg -3' miRNA: 3'- -GUGGCUCGcGCUUUCGACCUaca----------GCG- -5' |
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26701 | 5' | -54.3 | NC_005808.1 | + | 13628 | 0.67 | 0.639795 |
Target: 5'- aCACCuGGC-UGAAAGUcGGcAUGUCGCu -3' miRNA: 3'- -GUGGcUCGcGCUUUCGaCC-UACAGCG- -5' |
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26701 | 5' | -54.3 | NC_005808.1 | + | 14046 | 0.74 | 0.272109 |
Target: 5'- aAUgGAGCGCGAAAGCccggcgcUGGgcGUCGUu -3' miRNA: 3'- gUGgCUCGCGCUUUCG-------ACCuaCAGCG- -5' |
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26701 | 5' | -54.3 | NC_005808.1 | + | 14387 | 0.71 | 0.396214 |
Target: 5'- gCGCCGcggaacguaGGCGUagcGAAGCUGGgcGUCGCc -3' miRNA: 3'- -GUGGC---------UCGCGc--UUUCGACCuaCAGCG- -5' |
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26701 | 5' | -54.3 | NC_005808.1 | + | 15156 | 0.69 | 0.485628 |
Target: 5'- gCGCCcAGgGCGAcGGCUG-AUGUUGCu -3' miRNA: 3'- -GUGGcUCgCGCUuUCGACcUACAGCG- -5' |
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26701 | 5' | -54.3 | NC_005808.1 | + | 16772 | 0.66 | 0.695839 |
Target: 5'- cCACCGGcGaCGUGAAGGCgaug-GUCGCc -3' miRNA: 3'- -GUGGCU-C-GCGCUUUCGaccuaCAGCG- -5' |
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26701 | 5' | -54.3 | NC_005808.1 | + | 17341 | 0.66 | 0.706901 |
Target: 5'- gACCGAGCaGCGcGAGCaacaGGUG-CGCu -3' miRNA: 3'- gUGGCUCG-CGCuUUCGac--CUACaGCG- -5' |
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26701 | 5' | -54.3 | NC_005808.1 | + | 17516 | 0.77 | 0.172377 |
Target: 5'- gCGCCGGGCGCGcugcGCUGGGUGgcgaUGCu -3' miRNA: 3'- -GUGGCUCGCGCuuu-CGACCUACa---GCG- -5' |
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26701 | 5' | -54.3 | NC_005808.1 | + | 19937 | 1 | 0.00397 |
Target: 5'- gCACCGAGCGCGAAAGCUGGAUGU-GCa -3' miRNA: 3'- -GUGGCUCGCGCUUUCGACCUACAgCG- -5' |
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26701 | 5' | -54.3 | NC_005808.1 | + | 21452 | 0.69 | 0.539258 |
Target: 5'- aACCaGGGCGCGGAcacggcggccaAGCUGGGcagcGUCGa -3' miRNA: 3'- gUGG-CUCGCGCUU-----------UCGACCUa---CAGCg -5' |
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26701 | 5' | -54.3 | NC_005808.1 | + | 24491 | 0.7 | 0.444618 |
Target: 5'- gUACCGgacGGCGCGAAGGCguccUGGu--UCGCg -3' miRNA: 3'- -GUGGC---UCGCGCUUUCG----ACCuacAGCG- -5' |
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26701 | 5' | -54.3 | NC_005808.1 | + | 24906 | 0.72 | 0.36002 |
Target: 5'- gCGCCGGaaugaacguGCGCGAcuuGGGCUGGAUGaUGUc -3' miRNA: 3'- -GUGGCU---------CGCGCU---UUCGACCUACaGCG- -5' |
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26701 | 5' | -54.3 | NC_005808.1 | + | 25754 | 0.69 | 0.539258 |
Target: 5'- aCGCUGGGCGCGcu-GCUGGgcGgcgGCa -3' miRNA: 3'- -GUGGCUCGCGCuuuCGACCuaCag-CG- -5' |
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26701 | 5' | -54.3 | NC_005808.1 | + | 25833 | 0.67 | 0.62852 |
Target: 5'- cCGCCGuuGGCGcCGGucaguuccauGCUGGucuUGUCGCc -3' miRNA: 3'- -GUGGC--UCGC-GCUuu--------CGACCu--ACAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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