miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26701 5' -54.3 NC_005808.1 + 35970 0.69 0.506799
Target:  5'- gGCCaAGCGCGcGAAGCUGGcgG-CGg -3'
miRNA:   3'- gUGGcUCGCGC-UUUCGACCuaCaGCg -5'
26701 5' -54.3 NC_005808.1 + 6445 0.69 0.506799
Target:  5'- cCACCGccCGCGAAGGCgucGccGUCGCg -3'
miRNA:   3'- -GUGGCucGCGCUUUCGac-CuaCAGCG- -5'
26701 5' -54.3 NC_005808.1 + 37674 0.69 0.496163
Target:  5'- -cCCGAGgGCaaGAAGCUGGucGUCGCc -3'
miRNA:   3'- guGGCUCgCGc-UUUCGACCuaCAGCG- -5'
26701 5' -54.3 NC_005808.1 + 34810 0.69 0.496163
Target:  5'- uGCUGGGCgGCGAAGGgUGGAcGccggCGCa -3'
miRNA:   3'- gUGGCUCG-CGCUUUCgACCUaCa---GCG- -5'
26701 5' -54.3 NC_005808.1 + 15156 0.69 0.485628
Target:  5'- gCGCCcAGgGCGAcGGCUG-AUGUUGCu -3'
miRNA:   3'- -GUGGcUCgCGCUuUCGACcUACAGCG- -5'
26701 5' -54.3 NC_005808.1 + 34684 0.7 0.475201
Target:  5'- aCGCCGAGCGCaacGAGcAGCUGGcgaucuaCGCa -3'
miRNA:   3'- -GUGGCUCGCG---CUU-UCGACCuaca---GCG- -5'
26701 5' -54.3 NC_005808.1 + 24491 0.7 0.444618
Target:  5'- gUACCGgacGGCGCGAAGGCguccUGGu--UCGCg -3'
miRNA:   3'- -GUGGC---UCGCGCUUUCG----ACCuacAGCG- -5'
26701 5' -54.3 NC_005808.1 + 29986 0.71 0.424853
Target:  5'- uGCCGAGCGCGucGGCgccAUG-CGCa -3'
miRNA:   3'- gUGGCUCGCGCuuUCGaccUACaGCG- -5'
26701 5' -54.3 NC_005808.1 + 14387 0.71 0.396214
Target:  5'- gCGCCGcggaacguaGGCGUagcGAAGCUGGgcGUCGCc -3'
miRNA:   3'- -GUGGC---------UCGCGc--UUUCGACCuaCAGCG- -5'
26701 5' -54.3 NC_005808.1 + 13223 0.72 0.378731
Target:  5'- gCGCCGAGUcCGAGGGCUGGGgcaaggccaccggCGCg -3'
miRNA:   3'- -GUGGCUCGcGCUUUCGACCUaca----------GCG- -5'
26701 5' -54.3 NC_005808.1 + 36261 0.72 0.368849
Target:  5'- gGCCGGGCGCuuuGGCUGGGgcggaaCGCg -3'
miRNA:   3'- gUGGCUCGCGcuuUCGACCUaca---GCG- -5'
26701 5' -54.3 NC_005808.1 + 24906 0.72 0.36002
Target:  5'- gCGCCGGaaugaacguGCGCGAcuuGGGCUGGAUGaUGUc -3'
miRNA:   3'- -GUGGCU---------CGCGCU---UUCGACCUACaGCG- -5'
26701 5' -54.3 NC_005808.1 + 27884 0.73 0.326198
Target:  5'- cUACCGGGCGC-AGGGCaUGGAgg-CGCa -3'
miRNA:   3'- -GUGGCUCGCGcUUUCG-ACCUacaGCG- -5'
26701 5' -54.3 NC_005808.1 + 14046 0.74 0.272109
Target:  5'- aAUgGAGCGCGAAAGCccggcgcUGGgcGUCGUu -3'
miRNA:   3'- gUGgCUCGCGCUUUCG-------ACCuaCAGCG- -5'
26701 5' -54.3 NC_005808.1 + 38746 0.74 0.265791
Target:  5'- aGCUGGGCgGCGAGGugcgcaaagugcGCUGGAUugGUCGCa -3'
miRNA:   3'- gUGGCUCG-CGCUUU------------CGACCUA--CAGCG- -5'
26701 5' -54.3 NC_005808.1 + 37367 0.74 0.252178
Target:  5'- gGCCGAacuGCGCGAAcuGCUGGGUauccgGUUGCa -3'
miRNA:   3'- gUGGCU---CGCGCUUu-CGACCUA-----CAGCG- -5'
26701 5' -54.3 NC_005808.1 + 17516 0.77 0.172377
Target:  5'- gCGCCGGGCGCGcugcGCUGGGUGgcgaUGCu -3'
miRNA:   3'- -GUGGCUCGCGCuuu-CGACCUACa---GCG- -5'
26701 5' -54.3 NC_005808.1 + 19937 1 0.00397
Target:  5'- gCACCGAGCGCGAAAGCUGGAUGU-GCa -3'
miRNA:   3'- -GUGGCUCGCGCUUUCGACCUACAgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.