miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26702 5' -57.1 NC_005808.1 + 9397 0.66 0.47331
Target:  5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3'
miRNA:   3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5'
26702 5' -57.1 NC_005808.1 + 10988 0.77 0.088398
Target:  5'- cGCUGCGUaaagcagcagguaGGGCCAGAAGCAGgCCCAGg -3'
miRNA:   3'- -UGGCGCG-------------CUUGGUCUUCGUC-GGGUUa -5'
26702 5' -57.1 NC_005808.1 + 11571 0.68 0.394459
Target:  5'- cCCGCGCGAuuGCCucGGccGGCaAGCCCGu- -3'
miRNA:   3'- uGGCGCGCU--UGGu-CU--UCG-UCGGGUua -5'
26702 5' -57.1 NC_005808.1 + 12647 0.66 0.47331
Target:  5'- cGCCGCGaCGAcaagcaccACCuGAcuGGCaAGCCCAc- -3'
miRNA:   3'- -UGGCGC-GCU--------UGGuCU--UCG-UCGGGUua -5'
26702 5' -57.1 NC_005808.1 + 13014 0.67 0.452829
Target:  5'- aACCGCGCGc-CUGGgcGCGGCCg--- -3'
miRNA:   3'- -UGGCGCGCuuGGUCuuCGUCGGguua -5'
26702 5' -57.1 NC_005808.1 + 13134 0.69 0.319768
Target:  5'- gGCCGCGCGcuucgucgccugguGCCAGGAGCA-CCUGGg -3'
miRNA:   3'- -UGGCGCGCu-------------UGGUCUUCGUcGGGUUa -5'
26702 5' -57.1 NC_005808.1 + 13836 0.68 0.385213
Target:  5'- cGCCGUGCGcGCCgAGAAGC-GCaCCGc- -3'
miRNA:   3'- -UGGCGCGCuUGG-UCUUCGuCG-GGUua -5'
26702 5' -57.1 NC_005808.1 + 16200 0.7 0.264405
Target:  5'- cGCCGUGCuGGCCgAGAaguucgAGCAGUCCAAg -3'
miRNA:   3'- -UGGCGCGcUUGG-UCU------UCGUCGGGUUa -5'
26702 5' -57.1 NC_005808.1 + 16319 0.68 0.393527
Target:  5'- cAUCGCGCGcgaugcgcgagccGACCAGGccggcGGguGCCCGu- -3'
miRNA:   3'- -UGGCGCGC-------------UUGGUCU-----UCguCGGGUua -5'
26702 5' -57.1 NC_005808.1 + 16564 0.66 0.47331
Target:  5'- cGCCGCGCGGgcuuugauGCCAucgccGAGGaAGCCCu-- -3'
miRNA:   3'- -UGGCGCGCU--------UGGU-----CUUCgUCGGGuua -5'
26702 5' -57.1 NC_005808.1 + 17785 0.68 0.385213
Target:  5'- -gCGCGCGAACggaUAGAAGCGcGCgCAGUa -3'
miRNA:   3'- ugGCGCGCUUG---GUCUUCGU-CGgGUUA- -5'
26702 5' -57.1 NC_005808.1 + 17869 0.76 0.102573
Target:  5'- gGCCGCGCaGGCgCgguGGAAGCGGCCCGAc -3'
miRNA:   3'- -UGGCGCGcUUG-G---UCUUCGUCGGGUUa -5'
26702 5' -57.1 NC_005808.1 + 18093 0.72 0.202251
Target:  5'- aGCCgGCGCGAACCAGGAcgccuucgcGCcGUCCGGUa -3'
miRNA:   3'- -UGG-CGCGCUUGGUCUU---------CGuCGGGUUA- -5'
26702 5' -57.1 NC_005808.1 + 18870 0.67 0.442771
Target:  5'- uGCUGCGCGccACC-GAGGCacuGGCCCGc- -3'
miRNA:   3'- -UGGCGCGCu-UGGuCUUCG---UCGGGUua -5'
26702 5' -57.1 NC_005808.1 + 19156 0.66 0.515597
Target:  5'- -aCGCGCGAACCAuccGCAuCCCGGc -3'
miRNA:   3'- ugGCGCGCUUGGUcuuCGUcGGGUUa -5'
26702 5' -57.1 NC_005808.1 + 19636 0.67 0.42304
Target:  5'- gGCUGaCGCaGGaauACCAGAAGCAGaCCGAa -3'
miRNA:   3'- -UGGC-GCG-CU---UGGUCUUCGUCgGGUUa -5'
26702 5' -57.1 NC_005808.1 + 19728 1.05 0.000775
Target:  5'- aACCGCGCGAACCAGAAGCAGCCCAAUu -3'
miRNA:   3'- -UGGCGCGCUUGGUCUUCGUCGGGUUA- -5'
26702 5' -57.1 NC_005808.1 + 21409 0.68 0.385213
Target:  5'- -aCGCGCaGACCAGcAGCAGgCCGc- -3'
miRNA:   3'- ugGCGCGcUUGGUCuUCGUCgGGUua -5'
26702 5' -57.1 NC_005808.1 + 21439 0.72 0.219437
Target:  5'- gGCCGCGCuguuGAACCAGGgcgcggacacGGCGGCCa--- -3'
miRNA:   3'- -UGGCGCG----CUUGGUCU----------UCGUCGGguua -5'
26702 5' -57.1 NC_005808.1 + 22727 0.66 0.46301
Target:  5'- -gCGCGCGAcGCCuucGGCAcGCCCGAa -3'
miRNA:   3'- ugGCGCGCU-UGGucuUCGU-CGGGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.