Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26703 | 3' | -48.2 | NC_005808.1 | + | 32063 | 0.66 | 0.94131 |
Target: 5'- ---uUGCGCGUGg--CGGCGGAaagcgugGCCg -3' miRNA: 3'- uuauGCGCGUACuuaGCCGUUUa------CGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 24878 | 0.66 | 0.951483 |
Target: 5'- aAAUGCGCGCAgcuUGccgcGAUgGGCAuuucccgGCCc -3' miRNA: 3'- -UUAUGCGCGU---AC----UUAgCCGUuua----CGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 28775 | 0.66 | 0.951483 |
Target: 5'- --gGCGCGCAcgGcGUCGcGCu--UGCCc -3' miRNA: 3'- uuaUGCGCGUa-CuUAGC-CGuuuACGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 31449 | 0.66 | 0.951483 |
Target: 5'- -cUGCG-GCGUGGucAUCGGaaaguGGGUGCCu -3' miRNA: 3'- uuAUGCgCGUACU--UAGCCg----UUUACGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 13325 | 0.66 | 0.946556 |
Target: 5'- --gGCgGCGUAggcuuUCGGCAGGUcGCCg -3' miRNA: 3'- uuaUG-CGCGUacuu-AGCCGUUUA-CGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 638 | 0.66 | 0.935742 |
Target: 5'- --gGCGCGgGUGAacggGUCaGGCGGggGCUu -3' miRNA: 3'- uuaUGCGCgUACU----UAG-CCGUUuaCGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 13471 | 0.66 | 0.946556 |
Target: 5'- cGGUGuCGgGCAUGAccUgGGCG-AUGCCg -3' miRNA: 3'- -UUAU-GCgCGUACUu-AgCCGUuUACGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 41222 | 0.66 | 0.94131 |
Target: 5'- ---gUGCGCGUGGccgCGGCGcccuAUGUCa -3' miRNA: 3'- uuauGCGCGUACUua-GCCGUu---UACGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 24115 | 0.66 | 0.94131 |
Target: 5'- cAUGCGCGCGUagGggUCGuaGuccaGCCg -3' miRNA: 3'- uUAUGCGCGUA--CuuAGCcgUuua-CGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 22535 | 0.66 | 0.94131 |
Target: 5'- --cACGCGCAg----CGcGCGcGUGCCg -3' miRNA: 3'- uuaUGCGCGUacuuaGC-CGUuUACGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 177 | 0.66 | 0.951483 |
Target: 5'- --cGCGCGCA-GAAUgcCGGCGucauccccGCCa -3' miRNA: 3'- uuaUGCGCGUaCUUA--GCCGUuua-----CGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 17522 | 0.66 | 0.951483 |
Target: 5'- --gGCGCGCugcgcUGggU-GGCGAugcUGCCc -3' miRNA: 3'- uuaUGCGCGu----ACuuAgCCGUUu--ACGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 38893 | 0.67 | 0.910216 |
Target: 5'- gGAUGCGcCGCAUGGggCaGCGcGUcGCCg -3' miRNA: 3'- -UUAUGC-GCGUACUuaGcCGUuUA-CGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 6999 | 0.67 | 0.900805 |
Target: 5'- --cACGCGCGagcGggUCGGCucGcgugaugggcguuuGUGCCg -3' miRNA: 3'- uuaUGCGCGUa--CuuAGCCGu-U--------------UACGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 13017 | 0.67 | 0.917086 |
Target: 5'- ---cCGCGCAgcgcagUGGCGAcgGCCu -3' miRNA: 3'- uuauGCGCGUacuua-GCCGUUuaCGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 13809 | 0.67 | 0.919742 |
Target: 5'- -uUGCGCGCcUGugccuccugccacUCGGCGGAuuUGCCc -3' miRNA: 3'- uuAUGCGCGuACuu-----------AGCCGUUU--ACGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 17305 | 0.67 | 0.92363 |
Target: 5'- --gGCGCGCAUccauucCGGCAuauggGCCg -3' miRNA: 3'- uuaUGCGCGUAcuua--GCCGUuua--CGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 3272 | 0.67 | 0.910216 |
Target: 5'- ---cCGCGCcaGAuaGUCGGCccGUGCCu -3' miRNA: 3'- uuauGCGCGuaCU--UAGCCGuuUACGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 14039 | 0.67 | 0.903025 |
Target: 5'- cGUGCGCGCcgcgAUGGc-CGGCGGccgcaaggucGUGCCg -3' miRNA: 3'- uUAUGCGCG----UACUuaGCCGUU----------UACGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 18991 | 0.67 | 0.929849 |
Target: 5'- cAGU-CGCGCA-GggUCaGGCcGAUGUCc -3' miRNA: 3'- -UUAuGCGCGUaCuuAG-CCGuUUACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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