miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26703 3' -48.2 NC_005808.1 + 14039 0.67 0.903025
Target:  5'- cGUGCGCGCcgcgAUGGc-CGGCGGccgcaaggucGUGCCg -3'
miRNA:   3'- uUAUGCGCG----UACUuaGCCGUU----------UACGG- -5'
26703 3' -48.2 NC_005808.1 + 38893 0.67 0.910216
Target:  5'- gGAUGCGcCGCAUGGggCaGCGcGUcGCCg -3'
miRNA:   3'- -UUAUGC-GCGUACUuaGcCGUuUA-CGG- -5'
26703 3' -48.2 NC_005808.1 + 19238 0.67 0.910216
Target:  5'- --aGCGCGgcgucaggccCAUGAAcuucUCGGCGucGAUGCUg -3'
miRNA:   3'- uuaUGCGC----------GUACUU----AGCCGU--UUACGG- -5'
26703 3' -48.2 NC_005808.1 + 33953 0.67 0.929849
Target:  5'- ---cCGCGCgAUGAAggcCGGCGAccucGCCa -3'
miRNA:   3'- uuauGCGCG-UACUUa--GCCGUUua--CGG- -5'
26703 3' -48.2 NC_005808.1 + 37825 0.67 0.929849
Target:  5'- -cUGgGCGCAgu-GUgGGCGAAcGCCg -3'
miRNA:   3'- uuAUgCGCGUacuUAgCCGUUUaCGG- -5'
26703 3' -48.2 NC_005808.1 + 6720 0.67 0.917086
Target:  5'- --gGCGCGCAucugcuUGAGcaCGGCGucgGCCu -3'
miRNA:   3'- uuaUGCGCGU------ACUUa-GCCGUuuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 8227 0.67 0.917086
Target:  5'- cGUGCGCGgcCGUGcccucGUCGGCGAAgucGCUg -3'
miRNA:   3'- uUAUGCGC--GUACu----UAGCCGUUUa--CGG- -5'
26703 3' -48.2 NC_005808.1 + 16821 0.67 0.92363
Target:  5'- --cGCGCGCAUcg--CGGCcaucguUGCCg -3'
miRNA:   3'- uuaUGCGCGUAcuuaGCCGuuu---ACGG- -5'
26703 3' -48.2 NC_005808.1 + 36147 0.67 0.929849
Target:  5'- ----gGUGCGUGAGUuCGGgGAAgcaGCCa -3'
miRNA:   3'- uuaugCGCGUACUUA-GCCgUUUa--CGG- -5'
26703 3' -48.2 NC_005808.1 + 25541 0.67 0.929849
Target:  5'- cGUGCGCGagGUGAAggauUCGGCcaagaAGGUGCg -3'
miRNA:   3'- uUAUGCGCg-UACUU----AGCCG-----UUUACGg -5'
26703 3' -48.2 NC_005808.1 + 6999 0.67 0.900805
Target:  5'- --cACGCGCGagcGggUCGGCucGcgugaugggcguuuGUGCCg -3'
miRNA:   3'- uuaUGCGCGUa--CuuAGCCGu-U--------------UACGG- -5'
26703 3' -48.2 NC_005808.1 + 15391 0.67 0.903025
Target:  5'- --cGCGUGCGggc--CGGCGaaGAUGCCg -3'
miRNA:   3'- uuaUGCGCGUacuuaGCCGU--UUACGG- -5'
26703 3' -48.2 NC_005808.1 + 468 0.67 0.903025
Target:  5'- -uUGCGgGCGcUGucgCGGuCGGAUGCCu -3'
miRNA:   3'- uuAUGCgCGU-ACuuaGCC-GUUUACGG- -5'
26703 3' -48.2 NC_005808.1 + 34941 0.68 0.862407
Target:  5'- --aACgGCGCGUGua-CGGCAAGgaGCCg -3'
miRNA:   3'- uuaUG-CGCGUACuuaGCCGUUUa-CGG- -5'
26703 3' -48.2 NC_005808.1 + 16943 0.68 0.895515
Target:  5'- --gACGUaCAUGAcgcCGGCAGAacUGCCg -3'
miRNA:   3'- uuaUGCGcGUACUua-GCCGUUU--ACGG- -5'
26703 3' -48.2 NC_005808.1 + 13485 0.68 0.863292
Target:  5'- --cGCGCGCGUGAc-CGGCAGcaagucccgcacggGCCu -3'
miRNA:   3'- uuaUGCGCGUACUuaGCCGUUua------------CGG- -5'
26703 3' -48.2 NC_005808.1 + 2231 0.68 0.895515
Target:  5'- --cACGCGCAgcaggCGGCGcGUGgCCg -3'
miRNA:   3'- uuaUGCGCGUacuuaGCCGUuUAC-GG- -5'
26703 3' -48.2 NC_005808.1 + 25760 0.68 0.887692
Target:  5'- --gGCGCGCugcUGGGcggCGGCAAcgaugGCCg -3'
miRNA:   3'- uuaUGCGCGu--ACUUa--GCCGUUua---CGG- -5'
26703 3' -48.2 NC_005808.1 + 11092 0.68 0.862407
Target:  5'- --cGCGCGCGagcaccuuGUCGGCuGcgGCCa -3'
miRNA:   3'- uuaUGCGCGUacu-----UAGCCGuUuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 18713 0.68 0.862407
Target:  5'- --aGCaGCGCAUcGGuacggCGGCAcggGAUGCCg -3'
miRNA:   3'- uuaUG-CGCGUA-CUua---GCCGU---UUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.