miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26703 3' -48.2 NC_005808.1 + 18629 1.12 0.002157
Target:  5'- gAAUACGCGCAUGAAUCGGCAAAUGCCg -3'
miRNA:   3'- -UUAUGCGCGUACUUAGCCGUUUACGG- -5'
26703 3' -48.2 NC_005808.1 + 14379 0.78 0.359188
Target:  5'- ---cCGCGCGUGGucGUCGGCGug-GCCg -3'
miRNA:   3'- uuauGCGCGUACU--UAGCCGUuuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 12368 0.75 0.481697
Target:  5'- gGAUuuGCGCGUcGGUCGGCGagucGAUGCCu -3'
miRNA:   3'- -UUAugCGCGUAcUUAGCCGU----UUACGG- -5'
26703 3' -48.2 NC_005808.1 + 12398 0.74 0.57355
Target:  5'- -cUGCGCGCuUGuaugCGGCcuuGAUGCCg -3'
miRNA:   3'- uuAUGCGCGuACuua-GCCGu--UUACGG- -5'
26703 3' -48.2 NC_005808.1 + 4371 0.74 0.561772
Target:  5'- ---gUGCGCGUGAa--GGCGAcgGCCg -3'
miRNA:   3'- uuauGCGCGUACUuagCCGUUuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 4683 0.74 0.561772
Target:  5'- --aGCGCGCcgGAuagcgCGGCGAGaaugGCCg -3'
miRNA:   3'- uuaUGCGCGuaCUua---GCCGUUUa---CGG- -5'
26703 3' -48.2 NC_005808.1 + 34887 0.72 0.656954
Target:  5'- cGUGCGCuGCAguucAUCGGCAAGccgGCCg -3'
miRNA:   3'- uUAUGCG-CGUacu-UAGCCGUUUa--CGG- -5'
26703 3' -48.2 NC_005808.1 + 34552 0.72 0.656954
Target:  5'- --cGCGCGuCAUGGAcggCGGCAAGgacggcgGCCc -3'
miRNA:   3'- uuaUGCGC-GUACUUa--GCCGUUUa------CGG- -5'
26703 3' -48.2 NC_005808.1 + 5625 0.71 0.715948
Target:  5'- ---uCGCGCGUGGcgCGGCGcagcuUGCUg -3'
miRNA:   3'- uuauGCGCGUACUuaGCCGUuu---ACGG- -5'
26703 3' -48.2 NC_005808.1 + 26263 0.71 0.704287
Target:  5'- --gACGCGCAguggcaccGAAUCGGCc-AUGUCg -3'
miRNA:   3'- uuaUGCGCGUa-------CUUAGCCGuuUACGG- -5'
26703 3' -48.2 NC_005808.1 + 27672 0.71 0.715948
Target:  5'- --gGCGCGCA---GUCGGCAcuugagGCCg -3'
miRNA:   3'- uuaUGCGCGUacuUAGCCGUuua---CGG- -5'
26703 3' -48.2 NC_005808.1 + 29515 0.71 0.750288
Target:  5'- -uUGCGCGCGUGGA--GGcCGAGcGCCa -3'
miRNA:   3'- uuAUGCGCGUACUUagCC-GUUUaCGG- -5'
26703 3' -48.2 NC_005808.1 + 18498 0.71 0.715948
Target:  5'- --cGCGCGCAUGuagCGG--GGUGCCc -3'
miRNA:   3'- uuaUGCGCGUACuuaGCCguUUACGG- -5'
26703 3' -48.2 NC_005808.1 + 30174 0.71 0.738964
Target:  5'- cAGUugGCGCc--AGUCGGUGAagGCCa -3'
miRNA:   3'- -UUAugCGCGuacUUAGCCGUUuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 21087 0.71 0.738964
Target:  5'- gAAUGCGCGCGUcacGUCGGUGAGcGCg -3'
miRNA:   3'- -UUAUGCGCGUAcu-UAGCCGUUUaCGg -5'
26703 3' -48.2 NC_005808.1 + 6313 0.7 0.761471
Target:  5'- cGGUGCGUGCAaGAcgCGGCGcGUuccGCCc -3'
miRNA:   3'- -UUAUGCGCGUaCUuaGCCGUuUA---CGG- -5'
26703 3' -48.2 NC_005808.1 + 23948 0.7 0.783353
Target:  5'- --gGCGcCGCccGGcgagGUCGGCAuuUGCCg -3'
miRNA:   3'- uuaUGC-GCGuaCU----UAGCCGUuuACGG- -5'
26703 3' -48.2 NC_005808.1 + 8662 0.7 0.783353
Target:  5'- ---uCGCGCG---GUCGGCAuugcGUGCCg -3'
miRNA:   3'- uuauGCGCGUacuUAGCCGUu---UACGG- -5'
26703 3' -48.2 NC_005808.1 + 42213 0.69 0.844121
Target:  5'- --cGCGCGC-UGGccgcgcucaAUCGGCAg--GCCa -3'
miRNA:   3'- uuaUGCGCGuACU---------UAGCCGUuuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 14747 0.69 0.814753
Target:  5'- cAGUACGCGCAgc-AUUGGCGcgcagcgugucGGUGUCg -3'
miRNA:   3'- -UUAUGCGCGUacuUAGCCGU-----------UUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.