miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26703 3' -48.2 NC_005808.1 + 6720 0.67 0.917086
Target:  5'- --gGCGCGCAucugcuUGAGcaCGGCGucgGCCu -3'
miRNA:   3'- uuaUGCGCGU------ACUUa-GCCGUuuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 15404 0.67 0.917086
Target:  5'- --aGCaCGCAUGGAauacgCGGCAAggGUCg -3'
miRNA:   3'- uuaUGcGCGUACUUa----GCCGUUuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 6999 0.67 0.900805
Target:  5'- --cACGCGCGagcGggUCGGCucGcgugaugggcguuuGUGCCg -3'
miRNA:   3'- uuaUGCGCGUa--CuuAGCCGu-U--------------UACGG- -5'
26703 3' -48.2 NC_005808.1 + 14039 0.67 0.903025
Target:  5'- cGUGCGCGCcgcgAUGGc-CGGCGGccgcaaggucGUGCCg -3'
miRNA:   3'- uUAUGCGCG----UACUuaGCCGUU----------UACGG- -5'
26703 3' -48.2 NC_005808.1 + 468 0.67 0.903025
Target:  5'- -uUGCGgGCGcUGucgCGGuCGGAUGCCu -3'
miRNA:   3'- uuAUGCgCGU-ACuuaGCC-GUUUACGG- -5'
26703 3' -48.2 NC_005808.1 + 15391 0.67 0.903025
Target:  5'- --cGCGUGCGggc--CGGCGaaGAUGCCg -3'
miRNA:   3'- uuaUGCGCGUacuuaGCCGU--UUACGG- -5'
26703 3' -48.2 NC_005808.1 + 19238 0.67 0.910216
Target:  5'- --aGCGCGgcgucaggccCAUGAAcuucUCGGCGucGAUGCUg -3'
miRNA:   3'- uuaUGCGC----------GUACUU----AGCCGU--UUACGG- -5'
26703 3' -48.2 NC_005808.1 + 38893 0.67 0.910216
Target:  5'- gGAUGCGcCGCAUGGggCaGCGcGUcGCCg -3'
miRNA:   3'- -UUAUGC-GCGUACUuaGcCGUuUA-CGG- -5'
26703 3' -48.2 NC_005808.1 + 15586 0.67 0.917086
Target:  5'- --gACGCGCugcgGAugcaccgcgccAUCGGCcaGGAUGCUg -3'
miRNA:   3'- uuaUGCGCGua--CU-----------UAGCCG--UUUACGG- -5'
26703 3' -48.2 NC_005808.1 + 13809 0.67 0.919742
Target:  5'- -uUGCGCGCcUGugccuccugccacUCGGCGGAuuUGCCc -3'
miRNA:   3'- uuAUGCGCGuACuu-----------AGCCGUUU--ACGG- -5'
26703 3' -48.2 NC_005808.1 + 17305 0.67 0.92363
Target:  5'- --gGCGCGCAUccauucCGGCAuauggGCCg -3'
miRNA:   3'- uuaUGCGCGUAcuua--GCCGUuua--CGG- -5'
26703 3' -48.2 NC_005808.1 + 25639 0.67 0.92363
Target:  5'- --aGCGCGUccaccUCGGCGAGuucUGCCg -3'
miRNA:   3'- uuaUGCGCGuacuuAGCCGUUU---ACGG- -5'
26703 3' -48.2 NC_005808.1 + 18991 0.67 0.929849
Target:  5'- cAGU-CGCGCA-GggUCaGGCcGAUGUCc -3'
miRNA:   3'- -UUAuGCGCGUaCuuAG-CCGuUUACGG- -5'
26703 3' -48.2 NC_005808.1 + 25541 0.67 0.929849
Target:  5'- cGUGCGCGagGUGAAggauUCGGCcaagaAGGUGCg -3'
miRNA:   3'- uUAUGCGCg-UACUU----AGCCG-----UUUACGg -5'
26703 3' -48.2 NC_005808.1 + 13017 0.67 0.917086
Target:  5'- ---cCGCGCAgcgcagUGGCGAcgGCCu -3'
miRNA:   3'- uuauGCGCGUacuua-GCCGUUuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 24878 0.66 0.951483
Target:  5'- aAAUGCGCGCAgcuUGccgcGAUgGGCAuuucccgGCCc -3'
miRNA:   3'- -UUAUGCGCGU---AC----UUAgCCGUuua----CGG- -5'
26703 3' -48.2 NC_005808.1 + 13471 0.66 0.946556
Target:  5'- cGGUGuCGgGCAUGAccUgGGCG-AUGCCg -3'
miRNA:   3'- -UUAU-GCgCGUACUu-AgCCGUuUACGG- -5'
26703 3' -48.2 NC_005808.1 + 13325 0.66 0.946556
Target:  5'- --gGCgGCGUAggcuuUCGGCAGGUcGCCg -3'
miRNA:   3'- uuaUG-CGCGUacuu-AGCCGUUUA-CGG- -5'
26703 3' -48.2 NC_005808.1 + 31449 0.66 0.951483
Target:  5'- -cUGCG-GCGUGGucAUCGGaaaguGGGUGCCu -3'
miRNA:   3'- uuAUGCgCGUACU--UAGCCg----UUUACGG- -5'
26703 3' -48.2 NC_005808.1 + 28775 0.66 0.951483
Target:  5'- --gGCGCGCAcgGcGUCGcGCu--UGCCc -3'
miRNA:   3'- uuaUGCGCGUa-CuUAGC-CGuuuACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.