Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26703 | 3' | -48.2 | NC_005808.1 | + | 18629 | 1.12 | 0.002157 |
Target: 5'- gAAUACGCGCAUGAAUCGGCAAAUGCCg -3' miRNA: 3'- -UUAUGCGCGUACUUAGCCGUUUACGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 14379 | 0.78 | 0.359188 |
Target: 5'- ---cCGCGCGUGGucGUCGGCGug-GCCg -3' miRNA: 3'- uuauGCGCGUACU--UAGCCGUuuaCGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 12368 | 0.75 | 0.481697 |
Target: 5'- gGAUuuGCGCGUcGGUCGGCGagucGAUGCCu -3' miRNA: 3'- -UUAugCGCGUAcUUAGCCGU----UUACGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 4371 | 0.74 | 0.561772 |
Target: 5'- ---gUGCGCGUGAa--GGCGAcgGCCg -3' miRNA: 3'- uuauGCGCGUACUuagCCGUUuaCGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 4683 | 0.74 | 0.561772 |
Target: 5'- --aGCGCGCcgGAuagcgCGGCGAGaaugGCCg -3' miRNA: 3'- uuaUGCGCGuaCUua---GCCGUUUa---CGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 12398 | 0.74 | 0.57355 |
Target: 5'- -cUGCGCGCuUGuaugCGGCcuuGAUGCCg -3' miRNA: 3'- uuAUGCGCGuACuua-GCCGu--UUACGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 34887 | 0.72 | 0.656954 |
Target: 5'- cGUGCGCuGCAguucAUCGGCAAGccgGCCg -3' miRNA: 3'- uUAUGCG-CGUacu-UAGCCGUUUa--CGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 34552 | 0.72 | 0.656954 |
Target: 5'- --cGCGCGuCAUGGAcggCGGCAAGgacggcgGCCc -3' miRNA: 3'- uuaUGCGC-GUACUUa--GCCGUUUa------CGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 26263 | 0.71 | 0.704287 |
Target: 5'- --gACGCGCAguggcaccGAAUCGGCc-AUGUCg -3' miRNA: 3'- uuaUGCGCGUa-------CUUAGCCGuuUACGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 5625 | 0.71 | 0.715948 |
Target: 5'- ---uCGCGCGUGGcgCGGCGcagcuUGCUg -3' miRNA: 3'- uuauGCGCGUACUuaGCCGUuu---ACGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 18498 | 0.71 | 0.715948 |
Target: 5'- --cGCGCGCAUGuagCGG--GGUGCCc -3' miRNA: 3'- uuaUGCGCGUACuuaGCCguUUACGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 27672 | 0.71 | 0.715948 |
Target: 5'- --gGCGCGCA---GUCGGCAcuugagGCCg -3' miRNA: 3'- uuaUGCGCGUacuUAGCCGUuua---CGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 30174 | 0.71 | 0.738964 |
Target: 5'- cAGUugGCGCc--AGUCGGUGAagGCCa -3' miRNA: 3'- -UUAugCGCGuacUUAGCCGUUuaCGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 21087 | 0.71 | 0.738964 |
Target: 5'- gAAUGCGCGCGUcacGUCGGUGAGcGCg -3' miRNA: 3'- -UUAUGCGCGUAcu-UAGCCGUUUaCGg -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 29515 | 0.71 | 0.750288 |
Target: 5'- -uUGCGCGCGUGGA--GGcCGAGcGCCa -3' miRNA: 3'- uuAUGCGCGUACUUagCC-GUUUaCGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 6313 | 0.7 | 0.761471 |
Target: 5'- cGGUGCGUGCAaGAcgCGGCGcGUuccGCCc -3' miRNA: 3'- -UUAUGCGCGUaCUuaGCCGUuUA---CGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 23948 | 0.7 | 0.783353 |
Target: 5'- --gGCGcCGCccGGcgagGUCGGCAuuUGCCg -3' miRNA: 3'- uuaUGC-GCGuaCU----UAGCCGUuuACGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 8662 | 0.7 | 0.783353 |
Target: 5'- ---uCGCGCG---GUCGGCAuugcGUGCCg -3' miRNA: 3'- uuauGCGCGUacuUAGCCGUu---UACGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 16328 | 0.69 | 0.814753 |
Target: 5'- cGAUGCGCGagccGAccaggcCGGCGGGUGCCc -3' miRNA: 3'- -UUAUGCGCgua-CUua----GCCGUUUACGG- -5' |
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26703 | 3' | -48.2 | NC_005808.1 | + | 14747 | 0.69 | 0.814753 |
Target: 5'- cAGUACGCGCAgc-AUUGGCGcgcagcgugucGGUGUCg -3' miRNA: 3'- -UUAUGCGCGUacuUAGCCGU-----------UUACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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