miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26703 3' -48.2 NC_005808.1 + 3272 0.67 0.910216
Target:  5'- ---cCGCGCcaGAuaGUCGGCccGUGCCu -3'
miRNA:   3'- uuauGCGCGuaCU--UAGCCGuuUACGG- -5'
26703 3' -48.2 NC_005808.1 + 15586 0.67 0.917086
Target:  5'- --gACGCGCugcgGAugcaccgcgccAUCGGCcaGGAUGCUg -3'
miRNA:   3'- uuaUGCGCGua--CU-----------UAGCCG--UUUACGG- -5'
26703 3' -48.2 NC_005808.1 + 13017 0.67 0.917086
Target:  5'- ---cCGCGCAgcgcagUGGCGAcgGCCu -3'
miRNA:   3'- uuauGCGCGUacuua-GCCGUUuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 15404 0.67 0.917086
Target:  5'- --aGCaCGCAUGGAauacgCGGCAAggGUCg -3'
miRNA:   3'- uuaUGcGCGUACUUa----GCCGUUuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 6720 0.67 0.917086
Target:  5'- --gGCGCGCAucugcuUGAGcaCGGCGucgGCCu -3'
miRNA:   3'- uuaUGCGCGU------ACUUa-GCCGUuuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 8227 0.67 0.917086
Target:  5'- cGUGCGCGgcCGUGcccucGUCGGCGAAgucGCUg -3'
miRNA:   3'- uUAUGCGC--GUACu----UAGCCGUUUa--CGG- -5'
26703 3' -48.2 NC_005808.1 + 13809 0.67 0.919742
Target:  5'- -uUGCGCGCcUGugccuccugccacUCGGCGGAuuUGCCc -3'
miRNA:   3'- uuAUGCGCGuACuu-----------AGCCGUUU--ACGG- -5'
26703 3' -48.2 NC_005808.1 + 16821 0.67 0.92363
Target:  5'- --cGCGCGCAUcg--CGGCcaucguUGCCg -3'
miRNA:   3'- uuaUGCGCGUAcuuaGCCGuuu---ACGG- -5'
26703 3' -48.2 NC_005808.1 + 25639 0.67 0.92363
Target:  5'- --aGCGCGUccaccUCGGCGAGuucUGCCg -3'
miRNA:   3'- uuaUGCGCGuacuuAGCCGUUU---ACGG- -5'
26703 3' -48.2 NC_005808.1 + 17305 0.67 0.92363
Target:  5'- --gGCGCGCAUccauucCGGCAuauggGCCg -3'
miRNA:   3'- uuaUGCGCGUAcuua--GCCGUuua--CGG- -5'
26703 3' -48.2 NC_005808.1 + 33953 0.67 0.929849
Target:  5'- ---cCGCGCgAUGAAggcCGGCGAccucGCCa -3'
miRNA:   3'- uuauGCGCG-UACUUa--GCCGUUua--CGG- -5'
26703 3' -48.2 NC_005808.1 + 36147 0.67 0.929849
Target:  5'- ----gGUGCGUGAGUuCGGgGAAgcaGCCa -3'
miRNA:   3'- uuaugCGCGUACUUA-GCCgUUUa--CGG- -5'
26703 3' -48.2 NC_005808.1 + 37825 0.67 0.929849
Target:  5'- -cUGgGCGCAgu-GUgGGCGAAcGCCg -3'
miRNA:   3'- uuAUgCGCGUacuUAgCCGUUUaCGG- -5'
26703 3' -48.2 NC_005808.1 + 18991 0.67 0.929849
Target:  5'- cAGU-CGCGCA-GggUCaGGCcGAUGUCc -3'
miRNA:   3'- -UUAuGCGCGUaCuuAG-CCGuUUACGG- -5'
26703 3' -48.2 NC_005808.1 + 25541 0.67 0.929849
Target:  5'- cGUGCGCGagGUGAAggauUCGGCcaagaAGGUGCg -3'
miRNA:   3'- uUAUGCGCg-UACUU----AGCCG-----UUUACGg -5'
26703 3' -48.2 NC_005808.1 + 638 0.66 0.935742
Target:  5'- --gGCGCGgGUGAacggGUCaGGCGGggGCUu -3'
miRNA:   3'- uuaUGCGCgUACU----UAG-CCGUUuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 22535 0.66 0.94131
Target:  5'- --cACGCGCAg----CGcGCGcGUGCCg -3'
miRNA:   3'- uuaUGCGCGUacuuaGC-CGUuUACGG- -5'
26703 3' -48.2 NC_005808.1 + 41222 0.66 0.94131
Target:  5'- ---gUGCGCGUGGccgCGGCGcccuAUGUCa -3'
miRNA:   3'- uuauGCGCGUACUua-GCCGUu---UACGG- -5'
26703 3' -48.2 NC_005808.1 + 32063 0.66 0.94131
Target:  5'- ---uUGCGCGUGg--CGGCGGAaagcgugGCCg -3'
miRNA:   3'- uuauGCGCGUACuuaGCCGUUUa------CGG- -5'
26703 3' -48.2 NC_005808.1 + 24115 0.66 0.94131
Target:  5'- cAUGCGCGCGUagGggUCGuaGuccaGCCg -3'
miRNA:   3'- uUAUGCGCGUA--CuuAGCcgUuua-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.