miRNA display CGI


Results 61 - 67 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26703 3' -48.2 NC_005808.1 + 13325 0.66 0.946556
Target:  5'- --gGCgGCGUAggcuuUCGGCAGGUcGCCg -3'
miRNA:   3'- uuaUG-CGCGUacuu-AGCCGUUUA-CGG- -5'
26703 3' -48.2 NC_005808.1 + 13471 0.66 0.946556
Target:  5'- cGGUGuCGgGCAUGAccUgGGCG-AUGCCg -3'
miRNA:   3'- -UUAU-GCgCGUACUu-AgCCGUuUACGG- -5'
26703 3' -48.2 NC_005808.1 + 31449 0.66 0.951483
Target:  5'- -cUGCG-GCGUGGucAUCGGaaaguGGGUGCCu -3'
miRNA:   3'- uuAUGCgCGUACU--UAGCCg----UUUACGG- -5'
26703 3' -48.2 NC_005808.1 + 28775 0.66 0.951483
Target:  5'- --gGCGCGCAcgGcGUCGcGCu--UGCCc -3'
miRNA:   3'- uuaUGCGCGUa-CuUAGC-CGuuuACGG- -5'
26703 3' -48.2 NC_005808.1 + 177 0.66 0.951483
Target:  5'- --cGCGCGCA-GAAUgcCGGCGucauccccGCCa -3'
miRNA:   3'- uuaUGCGCGUaCUUA--GCCGUuua-----CGG- -5'
26703 3' -48.2 NC_005808.1 + 17522 0.66 0.951483
Target:  5'- --gGCGCGCugcgcUGggU-GGCGAugcUGCCc -3'
miRNA:   3'- uuaUGCGCGu----ACuuAgCCGUUu--ACGG- -5'
26703 3' -48.2 NC_005808.1 + 24878 0.66 0.951483
Target:  5'- aAAUGCGCGCAgcuUGccgcGAUgGGCAuuucccgGCCc -3'
miRNA:   3'- -UUAUGCGCGU---AC----UUAgCCGUuua----CGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.