miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26703 3' -48.2 NC_005808.1 + 13809 0.67 0.919742
Target:  5'- -uUGCGCGCcUGugccuccugccacUCGGCGGAuuUGCCc -3'
miRNA:   3'- uuAUGCGCGuACuu-----------AGCCGUUU--ACGG- -5'
26703 3' -48.2 NC_005808.1 + 15586 0.67 0.917086
Target:  5'- --gACGCGCugcgGAugcaccgcgccAUCGGCcaGGAUGCUg -3'
miRNA:   3'- uuaUGCGCGua--CU-----------UAGCCG--UUUACGG- -5'
26703 3' -48.2 NC_005808.1 + 13017 0.67 0.917086
Target:  5'- ---cCGCGCAgcgcagUGGCGAcgGCCu -3'
miRNA:   3'- uuauGCGCGUacuua-GCCGUUuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 8227 0.67 0.917086
Target:  5'- cGUGCGCGgcCGUGcccucGUCGGCGAAgucGCUg -3'
miRNA:   3'- uUAUGCGC--GUACu----UAGCCGUUUa--CGG- -5'
26703 3' -48.2 NC_005808.1 + 15404 0.67 0.917086
Target:  5'- --aGCaCGCAUGGAauacgCGGCAAggGUCg -3'
miRNA:   3'- uuaUGcGCGUACUUa----GCCGUUuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 6720 0.67 0.917086
Target:  5'- --gGCGCGCAucugcuUGAGcaCGGCGucgGCCu -3'
miRNA:   3'- uuaUGCGCGU------ACUUa-GCCGUuuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 38893 0.67 0.910216
Target:  5'- gGAUGCGcCGCAUGGggCaGCGcGUcGCCg -3'
miRNA:   3'- -UUAUGC-GCGUACUuaGcCGUuUA-CGG- -5'
26703 3' -48.2 NC_005808.1 + 3272 0.67 0.910216
Target:  5'- ---cCGCGCcaGAuaGUCGGCccGUGCCu -3'
miRNA:   3'- uuauGCGCGuaCU--UAGCCGuuUACGG- -5'
26703 3' -48.2 NC_005808.1 + 19238 0.67 0.910216
Target:  5'- --aGCGCGgcgucaggccCAUGAAcuucUCGGCGucGAUGCUg -3'
miRNA:   3'- uuaUGCGC----------GUACUU----AGCCGU--UUACGG- -5'
26703 3' -48.2 NC_005808.1 + 14039 0.67 0.903025
Target:  5'- cGUGCGCGCcgcgAUGGc-CGGCGGccgcaaggucGUGCCg -3'
miRNA:   3'- uUAUGCGCG----UACUuaGCCGUU----------UACGG- -5'
26703 3' -48.2 NC_005808.1 + 468 0.67 0.903025
Target:  5'- -uUGCGgGCGcUGucgCGGuCGGAUGCCu -3'
miRNA:   3'- uuAUGCgCGU-ACuuaGCC-GUUUACGG- -5'
26703 3' -48.2 NC_005808.1 + 15391 0.67 0.903025
Target:  5'- --cGCGUGCGggc--CGGCGaaGAUGCCg -3'
miRNA:   3'- uuaUGCGCGUacuuaGCCGU--UUACGG- -5'
26703 3' -48.2 NC_005808.1 + 6999 0.67 0.900805
Target:  5'- --cACGCGCGagcGggUCGGCucGcgugaugggcguuuGUGCCg -3'
miRNA:   3'- uuaUGCGCGUa--CuuAGCCGu-U--------------UACGG- -5'
26703 3' -48.2 NC_005808.1 + 16943 0.68 0.895515
Target:  5'- --gACGUaCAUGAcgcCGGCAGAacUGCCg -3'
miRNA:   3'- uuaUGCGcGUACUua-GCCGUUU--ACGG- -5'
26703 3' -48.2 NC_005808.1 + 2231 0.68 0.895515
Target:  5'- --cACGCGCAgcaggCGGCGcGUGgCCg -3'
miRNA:   3'- uuaUGCGCGUacuuaGCCGUuUAC-GG- -5'
26703 3' -48.2 NC_005808.1 + 28649 0.68 0.887692
Target:  5'- --cGCGCGCAgUGccaGAUCGGUgccGGcgGCCu -3'
miRNA:   3'- uuaUGCGCGU-AC---UUAGCCG---UUuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 25760 0.68 0.887692
Target:  5'- --gGCGCGCugcUGGGcggCGGCAAcgaugGCCg -3'
miRNA:   3'- uuaUGCGCGu--ACUUa--GCCGUUua---CGG- -5'
26703 3' -48.2 NC_005808.1 + 8481 0.68 0.879561
Target:  5'- aGAUugGCGaucuGGUCGGCAuaguccacgucGAUGCCc -3'
miRNA:   3'- -UUAugCGCguacUUAGCCGU-----------UUACGG- -5'
26703 3' -48.2 NC_005808.1 + 10476 0.68 0.87113
Target:  5'- --cGgGgGCGUcGAgGUCGGCAGcgGCCa -3'
miRNA:   3'- uuaUgCgCGUA-CU-UAGCCGUUuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 13485 0.68 0.863292
Target:  5'- --cGCGCGCGUGAc-CGGCAGcaagucccgcacggGCCu -3'
miRNA:   3'- uuaUGCGCGUACUuaGCCGUUua------------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.