Results 61 - 67 of 67 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26703 | 3' | -48.2 | NC_005808.1 | + | 34552 | 0.72 | 0.656954 |
Target: 5'- --cGCGCGuCAUGGAcggCGGCAAGgacggcgGCCc -3' miRNA: 3'- uuaUGCGC-GUACUUa--GCCGUUUa------CGG- -5' |
|||||||
26703 | 3' | -48.2 | NC_005808.1 | + | 12398 | 0.74 | 0.57355 |
Target: 5'- -cUGCGCGCuUGuaugCGGCcuuGAUGCCg -3' miRNA: 3'- uuAUGCGCGuACuua-GCCGu--UUACGG- -5' |
|||||||
26703 | 3' | -48.2 | NC_005808.1 | + | 4683 | 0.74 | 0.561772 |
Target: 5'- --aGCGCGCcgGAuagcgCGGCGAGaaugGCCg -3' miRNA: 3'- uuaUGCGCGuaCUua---GCCGUUUa---CGG- -5' |
|||||||
26703 | 3' | -48.2 | NC_005808.1 | + | 4371 | 0.74 | 0.561772 |
Target: 5'- ---gUGCGCGUGAa--GGCGAcgGCCg -3' miRNA: 3'- uuauGCGCGUACUuagCCGUUuaCGG- -5' |
|||||||
26703 | 3' | -48.2 | NC_005808.1 | + | 12368 | 0.75 | 0.481697 |
Target: 5'- gGAUuuGCGCGUcGGUCGGCGagucGAUGCCu -3' miRNA: 3'- -UUAugCGCGUAcUUAGCCGU----UUACGG- -5' |
|||||||
26703 | 3' | -48.2 | NC_005808.1 | + | 14379 | 0.78 | 0.359188 |
Target: 5'- ---cCGCGCGUGGucGUCGGCGug-GCCg -3' miRNA: 3'- uuauGCGCGUACU--UAGCCGUuuaCGG- -5' |
|||||||
26703 | 3' | -48.2 | NC_005808.1 | + | 18629 | 1.12 | 0.002157 |
Target: 5'- gAAUACGCGCAUGAAUCGGCAAAUGCCg -3' miRNA: 3'- -UUAUGCGCGUACUUAGCCGUUUACGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home