miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26703 3' -48.2 NC_005808.1 + 177 0.66 0.951483
Target:  5'- --cGCGCGCA-GAAUgcCGGCGucauccccGCCa -3'
miRNA:   3'- uuaUGCGCGUaCUUA--GCCGUuua-----CGG- -5'
26703 3' -48.2 NC_005808.1 + 468 0.67 0.903025
Target:  5'- -uUGCGgGCGcUGucgCGGuCGGAUGCCu -3'
miRNA:   3'- uuAUGCgCGU-ACuuaGCC-GUUUACGG- -5'
26703 3' -48.2 NC_005808.1 + 638 0.66 0.935742
Target:  5'- --gGCGCGgGUGAacggGUCaGGCGGggGCUu -3'
miRNA:   3'- uuaUGCGCgUACU----UAG-CCGUUuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 2231 0.68 0.895515
Target:  5'- --cACGCGCAgcaggCGGCGcGUGgCCg -3'
miRNA:   3'- uuaUGCGCGUacuuaGCCGUuUAC-GG- -5'
26703 3' -48.2 NC_005808.1 + 3272 0.67 0.910216
Target:  5'- ---cCGCGCcaGAuaGUCGGCccGUGCCu -3'
miRNA:   3'- uuauGCGCGuaCU--UAGCCGuuUACGG- -5'
26703 3' -48.2 NC_005808.1 + 4192 0.69 0.824785
Target:  5'- cAGUGgGCGCcgaaaaguugGAAUCGGCGcgcaccGUGCCa -3'
miRNA:   3'- -UUAUgCGCGua--------CUUAGCCGUu-----UACGG- -5'
26703 3' -48.2 NC_005808.1 + 4371 0.74 0.561772
Target:  5'- ---gUGCGCGUGAa--GGCGAcgGCCg -3'
miRNA:   3'- uuauGCGCGUACUuagCCGUUuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 4683 0.74 0.561772
Target:  5'- --aGCGCGCcgGAuagcgCGGCGAGaaugGCCg -3'
miRNA:   3'- uuaUGCGCGuaCUua---GCCGUUUa---CGG- -5'
26703 3' -48.2 NC_005808.1 + 5625 0.71 0.715948
Target:  5'- ---uCGCGCGUGGcgCGGCGcagcuUGCUg -3'
miRNA:   3'- uuauGCGCGUACUuaGCCGUuu---ACGG- -5'
26703 3' -48.2 NC_005808.1 + 6313 0.7 0.761471
Target:  5'- cGGUGCGUGCAaGAcgCGGCGcGUuccGCCc -3'
miRNA:   3'- -UUAUGCGCGUaCUuaGCCGUuUA---CGG- -5'
26703 3' -48.2 NC_005808.1 + 6720 0.67 0.917086
Target:  5'- --gGCGCGCAucugcuUGAGcaCGGCGucgGCCu -3'
miRNA:   3'- uuaUGCGCGU------ACUUa-GCCGUuuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 6999 0.67 0.900805
Target:  5'- --cACGCGCGagcGggUCGGCucGcgugaugggcguuuGUGCCg -3'
miRNA:   3'- uuaUGCGCGUa--CuuAGCCGu-U--------------UACGG- -5'
26703 3' -48.2 NC_005808.1 + 8227 0.67 0.917086
Target:  5'- cGUGCGCGgcCGUGcccucGUCGGCGAAgucGCUg -3'
miRNA:   3'- uUAUGCGC--GUACu----UAGCCGUUUa--CGG- -5'
26703 3' -48.2 NC_005808.1 + 8481 0.68 0.879561
Target:  5'- aGAUugGCGaucuGGUCGGCAuaguccacgucGAUGCCc -3'
miRNA:   3'- -UUAugCGCguacUUAGCCGU-----------UUACGG- -5'
26703 3' -48.2 NC_005808.1 + 8662 0.7 0.783353
Target:  5'- ---uCGCGCG---GUCGGCAuugcGUGCCg -3'
miRNA:   3'- uuauGCGCGUacuUAGCCGUu---UACGG- -5'
26703 3' -48.2 NC_005808.1 + 8785 0.68 0.862407
Target:  5'- --cGCgGCGCAcgaUGggUCGGCcgc-GCCg -3'
miRNA:   3'- uuaUG-CGCGU---ACuuAGCCGuuuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 10476 0.68 0.87113
Target:  5'- --cGgGgGCGUcGAgGUCGGCAGcgGCCa -3'
miRNA:   3'- uuaUgCgCGUA-CU-UAGCCGUUuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 11092 0.68 0.862407
Target:  5'- --cGCGCGCGagcaccuuGUCGGCuGcgGCCa -3'
miRNA:   3'- uuaUGCGCGUacu-----UAGCCGuUuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 12368 0.75 0.481697
Target:  5'- gGAUuuGCGCGUcGGUCGGCGagucGAUGCCu -3'
miRNA:   3'- -UUAugCGCGUAcUUAGCCGU----UUACGG- -5'
26703 3' -48.2 NC_005808.1 + 12398 0.74 0.57355
Target:  5'- -cUGCGCGCuUGuaugCGGCcuuGAUGCCg -3'
miRNA:   3'- uuAUGCGCGuACuua-GCCGu--UUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.