miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26703 3' -48.2 NC_005808.1 + 13017 0.67 0.917086
Target:  5'- ---cCGCGCAgcgcagUGGCGAcgGCCu -3'
miRNA:   3'- uuauGCGCGUacuua-GCCGUUuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 13325 0.66 0.946556
Target:  5'- --gGCgGCGUAggcuuUCGGCAGGUcGCCg -3'
miRNA:   3'- uuaUG-CGCGUacuu-AGCCGUUUA-CGG- -5'
26703 3' -48.2 NC_005808.1 + 13471 0.66 0.946556
Target:  5'- cGGUGuCGgGCAUGAccUgGGCG-AUGCCg -3'
miRNA:   3'- -UUAU-GCgCGUACUu-AgCCGUuUACGG- -5'
26703 3' -48.2 NC_005808.1 + 13485 0.68 0.863292
Target:  5'- --cGCGCGCGUGAc-CGGCAGcaagucccgcacggGCCu -3'
miRNA:   3'- uuaUGCGCGUACUuaGCCGUUua------------CGG- -5'
26703 3' -48.2 NC_005808.1 + 13809 0.67 0.919742
Target:  5'- -uUGCGCGCcUGugccuccugccacUCGGCGGAuuUGCCc -3'
miRNA:   3'- uuAUGCGCGuACuu-----------AGCCGUUU--ACGG- -5'
26703 3' -48.2 NC_005808.1 + 14039 0.67 0.903025
Target:  5'- cGUGCGCGCcgcgAUGGc-CGGCGGccgcaaggucGUGCCg -3'
miRNA:   3'- uUAUGCGCG----UACUuaGCCGUU----------UACGG- -5'
26703 3' -48.2 NC_005808.1 + 14379 0.78 0.359188
Target:  5'- ---cCGCGCGUGGucGUCGGCGug-GCCg -3'
miRNA:   3'- uuauGCGCGUACU--UAGCCGUuuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 14747 0.69 0.814753
Target:  5'- cAGUACGCGCAgc-AUUGGCGcgcagcgugucGGUGUCg -3'
miRNA:   3'- -UUAUGCGCGUacuUAGCCGU-----------UUACGG- -5'
26703 3' -48.2 NC_005808.1 + 15391 0.67 0.903025
Target:  5'- --cGCGUGCGggc--CGGCGaaGAUGCCg -3'
miRNA:   3'- uuaUGCGCGUacuuaGCCGU--UUACGG- -5'
26703 3' -48.2 NC_005808.1 + 15404 0.67 0.917086
Target:  5'- --aGCaCGCAUGGAauacgCGGCAAggGUCg -3'
miRNA:   3'- uuaUGcGCGUACUUa----GCCGUUuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 15586 0.67 0.917086
Target:  5'- --gACGCGCugcgGAugcaccgcgccAUCGGCcaGGAUGCUg -3'
miRNA:   3'- uuaUGCGCGua--CU-----------UAGCCG--UUUACGG- -5'
26703 3' -48.2 NC_005808.1 + 16328 0.69 0.814753
Target:  5'- cGAUGCGCGagccGAccaggcCGGCGGGUGCCc -3'
miRNA:   3'- -UUAUGCGCgua-CUua----GCCGUUUACGG- -5'
26703 3' -48.2 NC_005808.1 + 16821 0.67 0.92363
Target:  5'- --cGCGCGCAUcg--CGGCcaucguUGCCg -3'
miRNA:   3'- uuaUGCGCGUAcuuaGCCGuuu---ACGG- -5'
26703 3' -48.2 NC_005808.1 + 16943 0.68 0.895515
Target:  5'- --gACGUaCAUGAcgcCGGCAGAacUGCCg -3'
miRNA:   3'- uuaUGCGcGUACUua-GCCGUUU--ACGG- -5'
26703 3' -48.2 NC_005808.1 + 17305 0.67 0.92363
Target:  5'- --gGCGCGCAUccauucCGGCAuauggGCCg -3'
miRNA:   3'- uuaUGCGCGUAcuua--GCCGUuua--CGG- -5'
26703 3' -48.2 NC_005808.1 + 17522 0.66 0.951483
Target:  5'- --gGCGCGCugcgcUGggU-GGCGAugcUGCCc -3'
miRNA:   3'- uuaUGCGCGu----ACuuAgCCGUUu--ACGG- -5'
26703 3' -48.2 NC_005808.1 + 18498 0.71 0.715948
Target:  5'- --cGCGCGCAUGuagCGG--GGUGCCc -3'
miRNA:   3'- uuaUGCGCGUACuuaGCCguUUACGG- -5'
26703 3' -48.2 NC_005808.1 + 18629 1.12 0.002157
Target:  5'- gAAUACGCGCAUGAAUCGGCAAAUGCCg -3'
miRNA:   3'- -UUAUGCGCGUACUUAGCCGUUUACGG- -5'
26703 3' -48.2 NC_005808.1 + 18713 0.68 0.862407
Target:  5'- --aGCaGCGCAUcGGuacggCGGCAcggGAUGCCg -3'
miRNA:   3'- uuaUG-CGCGUA-CUua---GCCGU---UUACGG- -5'
26703 3' -48.2 NC_005808.1 + 18991 0.67 0.929849
Target:  5'- cAGU-CGCGCA-GggUCaGGCcGAUGUCc -3'
miRNA:   3'- -UUAuGCGCGUaCuuAG-CCGuUUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.