miRNA display CGI


Results 41 - 60 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26703 3' -48.2 NC_005808.1 + 19238 0.67 0.910216
Target:  5'- --aGCGCGgcgucaggccCAUGAAcuucUCGGCGucGAUGCUg -3'
miRNA:   3'- uuaUGCGC----------GUACUU----AGCCGU--UUACGG- -5'
26703 3' -48.2 NC_005808.1 + 21087 0.71 0.738964
Target:  5'- gAAUGCGCGCGUcacGUCGGUGAGcGCg -3'
miRNA:   3'- -UUAUGCGCGUAcu-UAGCCGUUUaCGg -5'
26703 3' -48.2 NC_005808.1 + 22535 0.66 0.94131
Target:  5'- --cACGCGCAg----CGcGCGcGUGCCg -3'
miRNA:   3'- uuaUGCGCGUacuuaGC-CGUuUACGG- -5'
26703 3' -48.2 NC_005808.1 + 23948 0.7 0.783353
Target:  5'- --gGCGcCGCccGGcgagGUCGGCAuuUGCCg -3'
miRNA:   3'- uuaUGC-GCGuaCU----UAGCCGUuuACGG- -5'
26703 3' -48.2 NC_005808.1 + 24115 0.66 0.94131
Target:  5'- cAUGCGCGCGUagGggUCGuaGuccaGCCg -3'
miRNA:   3'- uUAUGCGCGUA--CuuAGCcgUuua-CGG- -5'
26703 3' -48.2 NC_005808.1 + 24878 0.66 0.951483
Target:  5'- aAAUGCGCGCAgcuUGccgcGAUgGGCAuuucccgGCCc -3'
miRNA:   3'- -UUAUGCGCGU---AC----UUAgCCGUuua----CGG- -5'
26703 3' -48.2 NC_005808.1 + 25541 0.67 0.929849
Target:  5'- cGUGCGCGagGUGAAggauUCGGCcaagaAGGUGCg -3'
miRNA:   3'- uUAUGCGCg-UACUU----AGCCG-----UUUACGg -5'
26703 3' -48.2 NC_005808.1 + 25639 0.67 0.92363
Target:  5'- --aGCGCGUccaccUCGGCGAGuucUGCCg -3'
miRNA:   3'- uuaUGCGCGuacuuAGCCGUUU---ACGG- -5'
26703 3' -48.2 NC_005808.1 + 25760 0.68 0.887692
Target:  5'- --gGCGCGCugcUGGGcggCGGCAAcgaugGCCg -3'
miRNA:   3'- uuaUGCGCGu--ACUUa--GCCGUUua---CGG- -5'
26703 3' -48.2 NC_005808.1 + 26263 0.71 0.704287
Target:  5'- --gACGCGCAguggcaccGAAUCGGCc-AUGUCg -3'
miRNA:   3'- uuaUGCGCGUa-------CUUAGCCGuuUACGG- -5'
26703 3' -48.2 NC_005808.1 + 27672 0.71 0.715948
Target:  5'- --gGCGCGCA---GUCGGCAcuugagGCCg -3'
miRNA:   3'- uuaUGCGCGUacuUAGCCGUuua---CGG- -5'
26703 3' -48.2 NC_005808.1 + 28649 0.68 0.887692
Target:  5'- --cGCGCGCAgUGccaGAUCGGUgccGGcgGCCu -3'
miRNA:   3'- uuaUGCGCGU-AC---UUAGCCG---UUuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 28775 0.66 0.951483
Target:  5'- --gGCGCGCAcgGcGUCGcGCu--UGCCc -3'
miRNA:   3'- uuaUGCGCGUa-CuUAGC-CGuuuACGG- -5'
26703 3' -48.2 NC_005808.1 + 29313 0.69 0.853401
Target:  5'- --gGCGCGC-UGcAAUCGGCGcugaaaGAcGCCa -3'
miRNA:   3'- uuaUGCGCGuAC-UUAGCCGU------UUaCGG- -5'
26703 3' -48.2 NC_005808.1 + 29515 0.71 0.750288
Target:  5'- -uUGCGCGCGUGGA--GGcCGAGcGCCa -3'
miRNA:   3'- uuAUGCGCGUACUUagCC-GUUUaCGG- -5'
26703 3' -48.2 NC_005808.1 + 30174 0.71 0.738964
Target:  5'- cAGUugGCGCc--AGUCGGUGAagGCCa -3'
miRNA:   3'- -UUAugCGCGuacUUAGCCGUUuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 31449 0.66 0.951483
Target:  5'- -cUGCG-GCGUGGucAUCGGaaaguGGGUGCCu -3'
miRNA:   3'- uuAUGCgCGUACU--UAGCCg----UUUACGG- -5'
26703 3' -48.2 NC_005808.1 + 32063 0.66 0.94131
Target:  5'- ---uUGCGCGUGg--CGGCGGAaagcgugGCCg -3'
miRNA:   3'- uuauGCGCGUACuuaGCCGUUUa------CGG- -5'
26703 3' -48.2 NC_005808.1 + 33953 0.67 0.929849
Target:  5'- ---cCGCGCgAUGAAggcCGGCGAccucGCCa -3'
miRNA:   3'- uuauGCGCG-UACUUa--GCCGUUua--CGG- -5'
26703 3' -48.2 NC_005808.1 + 34552 0.72 0.656954
Target:  5'- --cGCGCGuCAUGGAcggCGGCAAGgacggcgGCCc -3'
miRNA:   3'- uuaUGCGC-GUACUUa--GCCGUUUa------CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.