Results 61 - 67 of 67 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 26703 | 3' | -48.2 | NC_005808.1 | + | 34887 | 0.72 | 0.656954 |
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Target: 5'- cGUGCGCuGCAguucAUCGGCAAGccgGCCg -3' miRNA: 3'- uUAUGCG-CGUacu-UAGCCGUUUa--CGG- -5' |
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| 26703 | 3' | -48.2 | NC_005808.1 | + | 34941 | 0.68 | 0.862407 |
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Target: 5'- --aACgGCGCGUGua-CGGCAAGgaGCCg -3' miRNA: 3'- uuaUG-CGCGUACuuaGCCGUUUa-CGG- -5' |
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| 26703 | 3' | -48.2 | NC_005808.1 | + | 36147 | 0.67 | 0.929849 |
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Target: 5'- ----gGUGCGUGAGUuCGGgGAAgcaGCCa -3' miRNA: 3'- uuaugCGCGUACUUA-GCCgUUUa--CGG- -5' |
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| 26703 | 3' | -48.2 | NC_005808.1 | + | 37825 | 0.67 | 0.929849 |
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Target: 5'- -cUGgGCGCAgu-GUgGGCGAAcGCCg -3' miRNA: 3'- uuAUgCGCGUacuUAgCCGUUUaCGG- -5' |
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| 26703 | 3' | -48.2 | NC_005808.1 | + | 38893 | 0.67 | 0.910216 |
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Target: 5'- gGAUGCGcCGCAUGGggCaGCGcGUcGCCg -3' miRNA: 3'- -UUAUGC-GCGUACUuaGcCGUuUA-CGG- -5' |
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| 26703 | 3' | -48.2 | NC_005808.1 | + | 41222 | 0.66 | 0.94131 |
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Target: 5'- ---gUGCGCGUGGccgCGGCGcccuAUGUCa -3' miRNA: 3'- uuauGCGCGUACUua-GCCGUu---UACGG- -5' |
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| 26703 | 3' | -48.2 | NC_005808.1 | + | 42213 | 0.69 | 0.844121 |
|
Target: 5'- --cGCGCGC-UGGccgcgcucaAUCGGCAg--GCCa -3' miRNA: 3'- uuaUGCGCGuACU---------UAGCCGUuuaCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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