miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26703 3' -48.2 NC_005808.1 + 15391 0.67 0.903025
Target:  5'- --cGCGUGCGggc--CGGCGaaGAUGCCg -3'
miRNA:   3'- uuaUGCGCGUacuuaGCCGU--UUACGG- -5'
26703 3' -48.2 NC_005808.1 + 8785 0.68 0.862407
Target:  5'- --cGCgGCGCAcgaUGggUCGGCcgc-GCCg -3'
miRNA:   3'- uuaUG-CGCGU---ACuuAGCCGuuuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 18713 0.68 0.862407
Target:  5'- --aGCaGCGCAUcGGuacggCGGCAcggGAUGCCg -3'
miRNA:   3'- uuaUG-CGCGUA-CUua---GCCGU---UUACGG- -5'
26703 3' -48.2 NC_005808.1 + 11092 0.68 0.862407
Target:  5'- --cGCGCGCGagcaccuuGUCGGCuGcgGCCa -3'
miRNA:   3'- uuaUGCGCGUacu-----UAGCCGuUuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 8481 0.68 0.879561
Target:  5'- aGAUugGCGaucuGGUCGGCAuaguccacgucGAUGCCc -3'
miRNA:   3'- -UUAugCGCguacUUAGCCGU-----------UUACGG- -5'
26703 3' -48.2 NC_005808.1 + 28649 0.68 0.887692
Target:  5'- --cGCGCGCAgUGccaGAUCGGUgccGGcgGCCu -3'
miRNA:   3'- uuaUGCGCGU-AC---UUAGCCG---UUuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 25760 0.68 0.887692
Target:  5'- --gGCGCGCugcUGGGcggCGGCAAcgaugGCCg -3'
miRNA:   3'- uuaUGCGCGu--ACUUa--GCCGUUua---CGG- -5'
26703 3' -48.2 NC_005808.1 + 2231 0.68 0.895515
Target:  5'- --cACGCGCAgcaggCGGCGcGUGgCCg -3'
miRNA:   3'- uuaUGCGCGUacuuaGCCGUuUAC-GG- -5'
26703 3' -48.2 NC_005808.1 + 468 0.67 0.903025
Target:  5'- -uUGCGgGCGcUGucgCGGuCGGAUGCCu -3'
miRNA:   3'- uuAUGCgCGU-ACuuaGCC-GUUUACGG- -5'
26703 3' -48.2 NC_005808.1 + 42213 0.69 0.844121
Target:  5'- --cGCGCGC-UGGccgcgcucaAUCGGCAg--GCCa -3'
miRNA:   3'- uuaUGCGCGuACU---------UAGCCGUuuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 4192 0.69 0.824785
Target:  5'- cAGUGgGCGCcgaaaaguugGAAUCGGCGcgcaccGUGCCa -3'
miRNA:   3'- -UUAUgCGCGua--------CUUAGCCGUu-----UACGG- -5'
26703 3' -48.2 NC_005808.1 + 14747 0.69 0.814753
Target:  5'- cAGUACGCGCAgc-AUUGGCGcgcagcgugucGGUGUCg -3'
miRNA:   3'- -UUAUGCGCGUacuUAGCCGU-----------UUACGG- -5'
26703 3' -48.2 NC_005808.1 + 4371 0.74 0.561772
Target:  5'- ---gUGCGCGUGAa--GGCGAcgGCCg -3'
miRNA:   3'- uuauGCGCGUACUuagCCGUUuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 4683 0.74 0.561772
Target:  5'- --aGCGCGCcgGAuagcgCGGCGAGaaugGCCg -3'
miRNA:   3'- uuaUGCGCGuaCUua---GCCGUUUa---CGG- -5'
26703 3' -48.2 NC_005808.1 + 12398 0.74 0.57355
Target:  5'- -cUGCGCGCuUGuaugCGGCcuuGAUGCCg -3'
miRNA:   3'- uuAUGCGCGuACuua-GCCGu--UUACGG- -5'
26703 3' -48.2 NC_005808.1 + 34887 0.72 0.656954
Target:  5'- cGUGCGCuGCAguucAUCGGCAAGccgGCCg -3'
miRNA:   3'- uUAUGCG-CGUacu-UAGCCGUUUa--CGG- -5'
26703 3' -48.2 NC_005808.1 + 21087 0.71 0.738964
Target:  5'- gAAUGCGCGCGUcacGUCGGUGAGcGCg -3'
miRNA:   3'- -UUAUGCGCGUAcu-UAGCCGUUUaCGg -5'
26703 3' -48.2 NC_005808.1 + 30174 0.71 0.738964
Target:  5'- cAGUugGCGCc--AGUCGGUGAagGCCa -3'
miRNA:   3'- -UUAugCGCGuacUUAGCCGUUuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 8662 0.7 0.783353
Target:  5'- ---uCGCGCG---GUCGGCAuugcGUGCCg -3'
miRNA:   3'- uuauGCGCGUacuUAGCCGUu---UACGG- -5'
26703 3' -48.2 NC_005808.1 + 23948 0.7 0.783353
Target:  5'- --gGCGcCGCccGGcgagGUCGGCAuuUGCCg -3'
miRNA:   3'- uuaUGC-GCGuaCU----UAGCCGUuuACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.