miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26703 3' -48.2 NC_005808.1 + 18629 1.12 0.002157
Target:  5'- gAAUACGCGCAUGAAUCGGCAAAUGCCg -3'
miRNA:   3'- -UUAUGCGCGUACUUAGCCGUUUACGG- -5'
26703 3' -48.2 NC_005808.1 + 3272 0.67 0.910216
Target:  5'- ---cCGCGCcaGAuaGUCGGCccGUGCCu -3'
miRNA:   3'- uuauGCGCGuaCU--UAGCCGuuUACGG- -5'
26703 3' -48.2 NC_005808.1 + 6720 0.67 0.917086
Target:  5'- --gGCGCGCAucugcuUGAGcaCGGCGucgGCCu -3'
miRNA:   3'- uuaUGCGCGU------ACUUa-GCCGUuuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 24878 0.66 0.951483
Target:  5'- aAAUGCGCGCAgcuUGccgcGAUgGGCAuuucccgGCCc -3'
miRNA:   3'- -UUAUGCGCGU---AC----UUAgCCGUuua----CGG- -5'
26703 3' -48.2 NC_005808.1 + 5625 0.71 0.715948
Target:  5'- ---uCGCGCGUGGcgCGGCGcagcuUGCUg -3'
miRNA:   3'- uuauGCGCGUACUuaGCCGUuu---ACGG- -5'
26703 3' -48.2 NC_005808.1 + 18498 0.71 0.715948
Target:  5'- --cGCGCGCAUGuagCGG--GGUGCCc -3'
miRNA:   3'- uuaUGCGCGUACuuaGCCguUUACGG- -5'
26703 3' -48.2 NC_005808.1 + 29515 0.71 0.750288
Target:  5'- -uUGCGCGCGUGGA--GGcCGAGcGCCa -3'
miRNA:   3'- uuAUGCGCGUACUUagCC-GUUUaCGG- -5'
26703 3' -48.2 NC_005808.1 + 6313 0.7 0.761471
Target:  5'- cGGUGCGUGCAaGAcgCGGCGcGUuccGCCc -3'
miRNA:   3'- -UUAUGCGCGUaCUuaGCCGUuUA---CGG- -5'
26703 3' -48.2 NC_005808.1 + 34941 0.68 0.862407
Target:  5'- --aACgGCGCGUGua-CGGCAAGgaGCCg -3'
miRNA:   3'- uuaUG-CGCGUACuuaGCCGUUUa-CGG- -5'
26703 3' -48.2 NC_005808.1 + 14039 0.67 0.903025
Target:  5'- cGUGCGCGCcgcgAUGGc-CGGCGGccgcaaggucGUGCCg -3'
miRNA:   3'- uUAUGCGCG----UACUuaGCCGUU----------UACGG- -5'
26703 3' -48.2 NC_005808.1 + 10476 0.68 0.87113
Target:  5'- --cGgGgGCGUcGAgGUCGGCAGcgGCCa -3'
miRNA:   3'- uuaUgCgCGUA-CU-UAGCCGUUuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 29313 0.69 0.853401
Target:  5'- --gGCGCGC-UGcAAUCGGCGcugaaaGAcGCCa -3'
miRNA:   3'- uuaUGCGCGuAC-UUAGCCGU------UUaCGG- -5'
26703 3' -48.2 NC_005808.1 + 14379 0.78 0.359188
Target:  5'- ---cCGCGCGUGGucGUCGGCGug-GCCg -3'
miRNA:   3'- uuauGCGCGUACU--UAGCCGUuuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 16943 0.68 0.895515
Target:  5'- --gACGUaCAUGAcgcCGGCAGAacUGCCg -3'
miRNA:   3'- uuaUGCGcGUACUua-GCCGUUU--ACGG- -5'
26703 3' -48.2 NC_005808.1 + 34552 0.72 0.656954
Target:  5'- --cGCGCGuCAUGGAcggCGGCAAGgacggcgGCCc -3'
miRNA:   3'- uuaUGCGC-GUACUUa--GCCGUUUa------CGG- -5'
26703 3' -48.2 NC_005808.1 + 16328 0.69 0.814753
Target:  5'- cGAUGCGCGagccGAccaggcCGGCGGGUGCCc -3'
miRNA:   3'- -UUAUGCGCgua-CUua----GCCGUUUACGG- -5'
26703 3' -48.2 NC_005808.1 + 6999 0.67 0.900805
Target:  5'- --cACGCGCGagcGggUCGGCucGcgugaugggcguuuGUGCCg -3'
miRNA:   3'- uuaUGCGCGUa--CuuAGCCGu-U--------------UACGG- -5'
26703 3' -48.2 NC_005808.1 + 15404 0.67 0.917086
Target:  5'- --aGCaCGCAUGGAauacgCGGCAAggGUCg -3'
miRNA:   3'- uuaUGcGCGUACUUa----GCCGUUuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 26263 0.71 0.704287
Target:  5'- --gACGCGCAguggcaccGAAUCGGCc-AUGUCg -3'
miRNA:   3'- uuaUGCGCGUa-------CUUAGCCGuuUACGG- -5'
26703 3' -48.2 NC_005808.1 + 27672 0.71 0.715948
Target:  5'- --gGCGCGCA---GUCGGCAcuugagGCCg -3'
miRNA:   3'- uuaUGCGCGUacuUAGCCGUuua---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.