miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26703 3' -48.2 NC_005808.1 + 6313 0.7 0.761471
Target:  5'- cGGUGCGUGCAaGAcgCGGCGcGUuccGCCc -3'
miRNA:   3'- -UUAUGCGCGUaCUuaGCCGUuUA---CGG- -5'
26703 3' -48.2 NC_005808.1 + 32063 0.66 0.94131
Target:  5'- ---uUGCGCGUGg--CGGCGGAaagcgugGCCg -3'
miRNA:   3'- uuauGCGCGUACuuaGCCGUUUa------CGG- -5'
26703 3' -48.2 NC_005808.1 + 6720 0.67 0.917086
Target:  5'- --gGCGCGCAucugcuUGAGcaCGGCGucgGCCu -3'
miRNA:   3'- uuaUGCGCGU------ACUUa-GCCGUuuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 29515 0.71 0.750288
Target:  5'- -uUGCGCGCGUGGA--GGcCGAGcGCCa -3'
miRNA:   3'- uuAUGCGCGUACUUagCC-GUUUaCGG- -5'
26703 3' -48.2 NC_005808.1 + 36147 0.67 0.929849
Target:  5'- ----gGUGCGUGAGUuCGGgGAAgcaGCCa -3'
miRNA:   3'- uuaugCGCGUACUUA-GCCgUUUa--CGG- -5'
26703 3' -48.2 NC_005808.1 + 177 0.66 0.951483
Target:  5'- --cGCGCGCA-GAAUgcCGGCGucauccccGCCa -3'
miRNA:   3'- uuaUGCGCGUaCUUA--GCCGUuua-----CGG- -5'
26703 3' -48.2 NC_005808.1 + 638 0.66 0.935742
Target:  5'- --gGCGCGgGUGAacggGUCaGGCGGggGCUu -3'
miRNA:   3'- uuaUGCGCgUACU----UAG-CCGUUuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 27672 0.71 0.715948
Target:  5'- --gGCGCGCA---GUCGGCAcuugagGCCg -3'
miRNA:   3'- uuaUGCGCGUacuUAGCCGUuua---CGG- -5'
26703 3' -48.2 NC_005808.1 + 18498 0.71 0.715948
Target:  5'- --cGCGCGCAUGuagCGG--GGUGCCc -3'
miRNA:   3'- uuaUGCGCGUACuuaGCCguUUACGG- -5'
26703 3' -48.2 NC_005808.1 + 16328 0.69 0.814753
Target:  5'- cGAUGCGCGagccGAccaggcCGGCGGGUGCCc -3'
miRNA:   3'- -UUAUGCGCgua-CUua----GCCGUUUACGG- -5'
26703 3' -48.2 NC_005808.1 + 6999 0.67 0.900805
Target:  5'- --cACGCGCGagcGggUCGGCucGcgugaugggcguuuGUGCCg -3'
miRNA:   3'- uuaUGCGCGUa--CuuAGCCGu-U--------------UACGG- -5'
26703 3' -48.2 NC_005808.1 + 30174 0.71 0.738964
Target:  5'- cAGUugGCGCc--AGUCGGUGAagGCCa -3'
miRNA:   3'- -UUAugCGCGuacUUAGCCGUUuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 22535 0.66 0.94131
Target:  5'- --cACGCGCAg----CGcGCGcGUGCCg -3'
miRNA:   3'- uuaUGCGCGUacuuaGC-CGUuUACGG- -5'
26703 3' -48.2 NC_005808.1 + 18991 0.67 0.929849
Target:  5'- cAGU-CGCGCA-GggUCaGGCcGAUGUCc -3'
miRNA:   3'- -UUAuGCGCGUaCuuAG-CCGuUUACGG- -5'
26703 3' -48.2 NC_005808.1 + 25639 0.67 0.92363
Target:  5'- --aGCGCGUccaccUCGGCGAGuucUGCCg -3'
miRNA:   3'- uuaUGCGCGuacuuAGCCGUUU---ACGG- -5'
26703 3' -48.2 NC_005808.1 + 17305 0.67 0.92363
Target:  5'- --gGCGCGCAUccauucCGGCAuauggGCCg -3'
miRNA:   3'- uuaUGCGCGUAcuua--GCCGUuua--CGG- -5'
26703 3' -48.2 NC_005808.1 + 13809 0.67 0.919742
Target:  5'- -uUGCGCGCcUGugccuccugccacUCGGCGGAuuUGCCc -3'
miRNA:   3'- uuAUGCGCGuACuu-----------AGCCGUUU--ACGG- -5'
26703 3' -48.2 NC_005808.1 + 8785 0.68 0.862407
Target:  5'- --cGCgGCGCAcgaUGggUCGGCcgc-GCCg -3'
miRNA:   3'- uuaUG-CGCGU---ACuuAGCCGuuuaCGG- -5'
26703 3' -48.2 NC_005808.1 + 18713 0.68 0.862407
Target:  5'- --aGCaGCGCAUcGGuacggCGGCAcggGAUGCCg -3'
miRNA:   3'- uuaUG-CGCGUA-CUua---GCCGU---UUACGG- -5'
26703 3' -48.2 NC_005808.1 + 11092 0.68 0.862407
Target:  5'- --cGCGCGCGagcaccuuGUCGGCuGcgGCCa -3'
miRNA:   3'- uuaUGCGCGUacu-----UAGCCGuUuaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.