miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26703 5' -60.8 NC_005808.1 + 28197 0.66 0.377787
Target:  5'- aGGuGCG-GCGCCuUGuCCAggucggcCACGCCg -3'
miRNA:   3'- gCC-CGCaCGCGG-ACuGGUa------GUGCGGa -5'
26703 5' -60.8 NC_005808.1 + 25996 0.66 0.360681
Target:  5'- -cGGCG-GCGCCaacACCAUCGCGUg- -3'
miRNA:   3'- gcCCGCaCGCGGac-UGGUAGUGCGga -5'
26703 5' -60.8 NC_005808.1 + 39705 0.66 0.360681
Target:  5'- gGGGCGcgcgGCGUCUGugcCCAUCAC-CUUc -3'
miRNA:   3'- gCCCGCa---CGCGGACu--GGUAGUGcGGA- -5'
26703 5' -60.8 NC_005808.1 + 14679 0.66 0.352332
Target:  5'- gCGGGUGUugaGCGCUUGaaGCCcggccugcaGUUGCGCCUc -3'
miRNA:   3'- -GCCCGCA---CGCGGAC--UGG---------UAGUGCGGA- -5'
26703 5' -60.8 NC_005808.1 + 34450 0.66 0.352332
Target:  5'- aGGGaCGcaGCGCCgacACCcgCACGCCc -3'
miRNA:   3'- gCCC-GCa-CGCGGac-UGGuaGUGCGGa -5'
26703 5' -60.8 NC_005808.1 + 18268 0.66 0.352332
Target:  5'- aCGGGCaucgcucUGcCGCCUGACCcgCGgcugcuCGCCg -3'
miRNA:   3'- -GCCCGc------AC-GCGGACUGGuaGU------GCGGa -5'
26703 5' -60.8 NC_005808.1 + 40148 0.66 0.33605
Target:  5'- -aGGCGaGCGCCUgGGCCGcaguuUCgGCGCCUu -3'
miRNA:   3'- gcCCGCaCGCGGA-CUGGU-----AG-UGCGGA- -5'
26703 5' -60.8 NC_005808.1 + 32866 0.67 0.328117
Target:  5'- aCGGuCG-GCGCCgaGAUUGUCGCGCCc -3'
miRNA:   3'- -GCCcGCaCGCGGa-CUGGUAGUGCGGa -5'
26703 5' -60.8 NC_005808.1 + 4375 0.67 0.320324
Target:  5'- -aGGCGgaUGCGCagccagGcGCCGUCGCGCCg -3'
miRNA:   3'- gcCCGC--ACGCGga----C-UGGUAGUGCGGa -5'
26703 5' -60.8 NC_005808.1 + 21325 0.67 0.29778
Target:  5'- uCGGGCuUGaUGCC-GGCCAcCGCGCCc -3'
miRNA:   3'- -GCCCGcAC-GCGGaCUGGUaGUGCGGa -5'
26703 5' -60.8 NC_005808.1 + 19181 0.67 0.29778
Target:  5'- -cGGCGU-CGCaCUGACCggCGCGCUc -3'
miRNA:   3'- gcCCGCAcGCG-GACUGGuaGUGCGGa -5'
26703 5' -60.8 NC_005808.1 + 4249 0.67 0.290544
Target:  5'- -uGGCGUagucgGUGCC-GGCCGUCAgCGCCg -3'
miRNA:   3'- gcCCGCA-----CGCGGaCUGGUAGU-GCGGa -5'
26703 5' -60.8 NC_005808.1 + 341 0.68 0.276487
Target:  5'- gGuGGCGUcGCGCagcaGGCCGUC-CGCCa -3'
miRNA:   3'- gC-CCGCA-CGCGga--CUGGUAGuGCGGa -5'
26703 5' -60.8 NC_005808.1 + 368 0.68 0.268989
Target:  5'- cCGGGUGUGCuugGCCUGccgauugagcgcgGCCAgCGCGCg- -3'
miRNA:   3'- -GCCCGCACG---CGGAC-------------UGGUaGUGCGga -5'
26703 5' -60.8 NC_005808.1 + 9729 0.68 0.256427
Target:  5'- uCGGGCGcgacaaucucgGCGCC-GACCGUCuGCgGCCa -3'
miRNA:   3'- -GCCCGCa----------CGCGGaCUGGUAG-UG-CGGa -5'
26703 5' -60.8 NC_005808.1 + 26332 0.68 0.256427
Target:  5'- cCGGGUGgccgcGCGCgaGGCCA--ACGCCa -3'
miRNA:   3'- -GCCCGCa----CGCGgaCUGGUagUGCGGa -5'
26703 5' -60.8 NC_005808.1 + 20757 0.69 0.243726
Target:  5'- aGaGGCGcUGCGCCgcgcucGACuCAUCGCGCg- -3'
miRNA:   3'- gC-CCGC-ACGCGGa-----CUG-GUAGUGCGga -5'
26703 5' -60.8 NC_005808.1 + 30460 0.7 0.208745
Target:  5'- gCGGaaGCGcaGCGCgUGGCgCGUCGCGCCa -3'
miRNA:   3'- -GCC--CGCa-CGCGgACUG-GUAGUGCGGa -5'
26703 5' -60.8 NC_005808.1 + 15776 0.7 0.192934
Target:  5'- gGGGCGgcGCaGCCUG-CCAaaaacagCACGCCUa -3'
miRNA:   3'- gCCCGCa-CG-CGGACuGGUa------GUGCGGA- -5'
26703 5' -60.8 NC_005808.1 + 41900 0.7 0.187901
Target:  5'- uGGGCGguaucuuggGCGCCcGGCCG--GCGCCg -3'
miRNA:   3'- gCCCGCa--------CGCGGaCUGGUagUGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.