miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26703 5' -60.8 NC_005808.1 + 18663 1.08 0.000254
Target:  5'- cCGGGCGUGCGCCUGACCAUCACGCCUa -3'
miRNA:   3'- -GCCCGCACGCGGACUGGUAGUGCGGA- -5'
26703 5' -60.8 NC_005808.1 + 1751 0.79 0.041469
Target:  5'- cCGGGCGgucauggccggccUGCGCCUGGCgCGUCGgGCCg -3'
miRNA:   3'- -GCCCGC-------------ACGCGGACUG-GUAGUgCGGa -5'
26703 5' -60.8 NC_005808.1 + 5757 0.73 0.111871
Target:  5'- cCGGGCagcgaGUGCGCCagggccuUGACCAUCGuguccCGCCa -3'
miRNA:   3'- -GCCCG-----CACGCGG-------ACUGGUAGU-----GCGGa -5'
26703 5' -60.8 NC_005808.1 + 34759 0.73 0.118563
Target:  5'- aGcGCGUGCGCCUGGUCAUCgugcagccGCGCCUc -3'
miRNA:   3'- gCcCGCACGCGGACUGGUAG--------UGCGGA- -5'
26703 5' -60.8 NC_005808.1 + 38215 0.72 0.136021
Target:  5'- cCGGcGCGacgGCGCCUGGCugcgCAUC-CGCCUg -3'
miRNA:   3'- -GCC-CGCa--CGCGGACUG----GUAGuGCGGA- -5'
26703 5' -60.8 NC_005808.1 + 23581 0.72 0.151659
Target:  5'- gCGGGCGggggGCGacgaUGGCCGUCAUGCg- -3'
miRNA:   3'- -GCCCGCa---CGCgg--ACUGGUAGUGCGga -5'
26703 5' -60.8 NC_005808.1 + 4640 0.71 0.168912
Target:  5'- uGGGCcacgcUGCGUC-GGCCAUCGCGUCa -3'
miRNA:   3'- gCCCGc----ACGCGGaCUGGUAGUGCGGa -5'
26703 5' -60.8 NC_005808.1 + 5441 0.71 0.173492
Target:  5'- gGcGGCGUGgGCgaGgucgguaucgACCAUCACGCCg -3'
miRNA:   3'- gC-CCGCACgCGgaC----------UGGUAGUGCGGa -5'
26703 5' -60.8 NC_005808.1 + 24127 0.71 0.175354
Target:  5'- gGGGuCGUaguccagccggcugcGCGCCUGGCCca-GCGCCUc -3'
miRNA:   3'- gCCC-GCA---------------CGCGGACUGGuagUGCGGA- -5'
26703 5' -60.8 NC_005808.1 + 41900 0.7 0.187901
Target:  5'- uGGGCGguaucuuggGCGCCcGGCCG--GCGCCg -3'
miRNA:   3'- gCCCGCa--------CGCGGaCUGGUagUGCGGa -5'
26703 5' -60.8 NC_005808.1 + 15776 0.7 0.192934
Target:  5'- gGGGCGgcGCaGCCUG-CCAaaaacagCACGCCUa -3'
miRNA:   3'- gCCCGCa-CG-CGGACuGGUa------GUGCGGA- -5'
26703 5' -60.8 NC_005808.1 + 30460 0.7 0.208745
Target:  5'- gCGGaaGCGcaGCGCgUGGCgCGUCGCGCCa -3'
miRNA:   3'- -GCC--CGCa-CGCGgACUG-GUAGUGCGGa -5'
26703 5' -60.8 NC_005808.1 + 20757 0.69 0.243726
Target:  5'- aGaGGCGcUGCGCCgcgcucGACuCAUCGCGCg- -3'
miRNA:   3'- gC-CCGC-ACGCGGa-----CUG-GUAGUGCGga -5'
26703 5' -60.8 NC_005808.1 + 26332 0.68 0.256427
Target:  5'- cCGGGUGgccgcGCGCgaGGCCA--ACGCCa -3'
miRNA:   3'- -GCCCGCa----CGCGgaCUGGUagUGCGGa -5'
26703 5' -60.8 NC_005808.1 + 9729 0.68 0.256427
Target:  5'- uCGGGCGcgacaaucucgGCGCC-GACCGUCuGCgGCCa -3'
miRNA:   3'- -GCCCGCa----------CGCGGaCUGGUAG-UG-CGGa -5'
26703 5' -60.8 NC_005808.1 + 368 0.68 0.268989
Target:  5'- cCGGGUGUGCuugGCCUGccgauugagcgcgGCCAgCGCGCg- -3'
miRNA:   3'- -GCCCGCACG---CGGAC-------------UGGUaGUGCGga -5'
26703 5' -60.8 NC_005808.1 + 341 0.68 0.276487
Target:  5'- gGuGGCGUcGCGCagcaGGCCGUC-CGCCa -3'
miRNA:   3'- gC-CCGCA-CGCGga--CUGGUAGuGCGGa -5'
26703 5' -60.8 NC_005808.1 + 4249 0.67 0.290544
Target:  5'- -uGGCGUagucgGUGCC-GGCCGUCAgCGCCg -3'
miRNA:   3'- gcCCGCA-----CGCGGaCUGGUAGU-GCGGa -5'
26703 5' -60.8 NC_005808.1 + 19181 0.67 0.29778
Target:  5'- -cGGCGU-CGCaCUGACCggCGCGCUc -3'
miRNA:   3'- gcCCGCAcGCG-GACUGGuaGUGCGGa -5'
26703 5' -60.8 NC_005808.1 + 21325 0.67 0.29778
Target:  5'- uCGGGCuUGaUGCC-GGCCAcCGCGCCc -3'
miRNA:   3'- -GCCCGcAC-GCGGaCUGGUaGUGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.