Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 26703 | 5' | -60.8 | NC_005808.1 | + | 24127 | 0.71 | 0.175354 |
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Target: 5'- gGGGuCGUaguccagccggcugcGCGCCUGGCCca-GCGCCUc -3' miRNA: 3'- gCCC-GCA---------------CGCGGACUGGuagUGCGGA- -5' |
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| 26703 | 5' | -60.8 | NC_005808.1 | + | 5441 | 0.71 | 0.173492 |
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Target: 5'- gGcGGCGUGgGCgaGgucgguaucgACCAUCACGCCg -3' miRNA: 3'- gC-CCGCACgCGgaC----------UGGUAGUGCGGa -5' |
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| 26703 | 5' | -60.8 | NC_005808.1 | + | 4640 | 0.71 | 0.168912 |
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Target: 5'- uGGGCcacgcUGCGUC-GGCCAUCGCGUCa -3' miRNA: 3'- gCCCGc----ACGCGGaCUGGUAGUGCGGa -5' |
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| 26703 | 5' | -60.8 | NC_005808.1 | + | 23581 | 0.72 | 0.151659 |
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Target: 5'- gCGGGCGggggGCGacgaUGGCCGUCAUGCg- -3' miRNA: 3'- -GCCCGCa---CGCgg--ACUGGUAGUGCGga -5' |
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| 26703 | 5' | -60.8 | NC_005808.1 | + | 38215 | 0.72 | 0.136021 |
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Target: 5'- cCGGcGCGacgGCGCCUGGCugcgCAUC-CGCCUg -3' miRNA: 3'- -GCC-CGCa--CGCGGACUG----GUAGuGCGGA- -5' |
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| 26703 | 5' | -60.8 | NC_005808.1 | + | 34759 | 0.73 | 0.118563 |
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Target: 5'- aGcGCGUGCGCCUGGUCAUCgugcagccGCGCCUc -3' miRNA: 3'- gCcCGCACGCGGACUGGUAG--------UGCGGA- -5' |
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| 26703 | 5' | -60.8 | NC_005808.1 | + | 5757 | 0.73 | 0.111871 |
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Target: 5'- cCGGGCagcgaGUGCGCCagggccuUGACCAUCGuguccCGCCa -3' miRNA: 3'- -GCCCG-----CACGCGG-------ACUGGUAGU-----GCGGa -5' |
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| 26703 | 5' | -60.8 | NC_005808.1 | + | 1751 | 0.79 | 0.041469 |
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Target: 5'- cCGGGCGgucauggccggccUGCGCCUGGCgCGUCGgGCCg -3' miRNA: 3'- -GCCCGC-------------ACGCGGACUG-GUAGUgCGGa -5' |
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| 26703 | 5' | -60.8 | NC_005808.1 | + | 18663 | 1.08 | 0.000254 |
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Target: 5'- cCGGGCGUGCGCCUGACCAUCACGCCUa -3' miRNA: 3'- -GCCCGCACGCGGACUGGUAGUGCGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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