Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26703 | 5' | -60.8 | NC_005808.1 | + | 9729 | 0.68 | 0.256427 |
Target: 5'- uCGGGCGcgacaaucucgGCGCC-GACCGUCuGCgGCCa -3' miRNA: 3'- -GCCCGCa----------CGCGGaCUGGUAG-UG-CGGa -5' |
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26703 | 5' | -60.8 | NC_005808.1 | + | 5757 | 0.73 | 0.111871 |
Target: 5'- cCGGGCagcgaGUGCGCCagggccuUGACCAUCGuguccCGCCa -3' miRNA: 3'- -GCCCG-----CACGCGG-------ACUGGUAGU-----GCGGa -5' |
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26703 | 5' | -60.8 | NC_005808.1 | + | 5441 | 0.71 | 0.173492 |
Target: 5'- gGcGGCGUGgGCgaGgucgguaucgACCAUCACGCCg -3' miRNA: 3'- gC-CCGCACgCGgaC----------UGGUAGUGCGGa -5' |
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26703 | 5' | -60.8 | NC_005808.1 | + | 4640 | 0.71 | 0.168912 |
Target: 5'- uGGGCcacgcUGCGUC-GGCCAUCGCGUCa -3' miRNA: 3'- gCCCGc----ACGCGGaCUGGUAGUGCGGa -5' |
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26703 | 5' | -60.8 | NC_005808.1 | + | 4375 | 0.67 | 0.320324 |
Target: 5'- -aGGCGgaUGCGCagccagGcGCCGUCGCGCCg -3' miRNA: 3'- gcCCGC--ACGCGga----C-UGGUAGUGCGGa -5' |
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26703 | 5' | -60.8 | NC_005808.1 | + | 4249 | 0.67 | 0.290544 |
Target: 5'- -uGGCGUagucgGUGCC-GGCCGUCAgCGCCg -3' miRNA: 3'- gcCCGCA-----CGCGGaCUGGUAGU-GCGGa -5' |
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26703 | 5' | -60.8 | NC_005808.1 | + | 1751 | 0.79 | 0.041469 |
Target: 5'- cCGGGCGgucauggccggccUGCGCCUGGCgCGUCGgGCCg -3' miRNA: 3'- -GCCCGC-------------ACGCGGACUG-GUAGUgCGGa -5' |
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26703 | 5' | -60.8 | NC_005808.1 | + | 368 | 0.68 | 0.268989 |
Target: 5'- cCGGGUGUGCuugGCCUGccgauugagcgcgGCCAgCGCGCg- -3' miRNA: 3'- -GCCCGCACG---CGGAC-------------UGGUaGUGCGga -5' |
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26703 | 5' | -60.8 | NC_005808.1 | + | 341 | 0.68 | 0.276487 |
Target: 5'- gGuGGCGUcGCGCagcaGGCCGUC-CGCCa -3' miRNA: 3'- gC-CCGCA-CGCGga--CUGGUAGuGCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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